Transcript 1062848

Transcript

ID CARD

MetamORF ID

1062848

ENSMUST00000020099

Name

Cdk1-201

Strand

Biotype

protein_coding

Start-end positions

69335146-69352938

CDS Start-stop positions

69338498-69350132

CDS Relative positions

Sequences

Transcript sequence

ACC ...

Genome browsers

UCSC

Gene

NCBI:12534

Aliases

Cdc2,
Cdc2a, Cdk1, ENSMUSG00000019942,
MGI:88351, NCBI:12534, OFF:Cdk1,
p34<CDC2>

Chr 10

ORFs

52 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
445323	87	TTG ...	LMT ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, v6-5
439995	84	ATG ...	MTK ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
442058	36	TTG ...	LEY ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, v6-5
978248	96	AGG ...	RTT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1241660	111	AAG ...	KSS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
72376	120	ATG ...	MCS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1282199	36	ACG ...	TRT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1282342	189	AGG ...	RMC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1116354	60	TTG ...	LEK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
445402	48	TTG ...	LPE ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, v6-5
445126	186	ATG ...	MCS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
1268543	48	AGG ...	REL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1282126	117	AAG ...	KSS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1278880	63	AGG ...	RDH ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
83435	54	CTG ...	LLS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF, v6-5
431447	36	GTG ...	VWP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, Neutrophil, v6-5
532536	123	GTG ...	VAR ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, NSC, v6-5
83172	51	TTG ...	LSN ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, MEF, v6-5
77504	84	ATG ...	MTK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14
977334	33	CTG ...	LPN ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
1282025	129	AAG ...	KCG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1235756	42	ACG ...	TNL ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1254879	30	ACG ...	TRT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
71398	84	TTG ...	LSS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
632631	57	TTG ...	LKA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
977885	123	AAG ...	KCG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
929049	174	AGG ...	RTP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
66221	36	TTG ...	LEY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1078419	45	GTG ...	VWP ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14, MEF, Neutrophil, v6-5
1062847	39	ATG ...	MIL ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, v6-5
1078332	66	TTG ...	LLR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF Upstream	E14, MEF, Neutrophil
525979	57	GTG ...	VVP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1283344	51	ACG ...	TSR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1282203	102	AGG ...	RTT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1176560	117	TTG ...	LMT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF, v6-5
1091875	102	TTG ...	LQN ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
1083545	42	TTG ...	LCF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
428895	75	GTG ...	VEA ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Neutrophil, v6-5
437350	72	CTG ...	LEY ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
1273071	45	ACG ...	TSR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1095378	57	TTG ...	LPL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1095029	114	ATG ...	MTW ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF, v6-5
67144	87	TTG ...	LMT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1076050	72	CTG ...	LEL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF Upstream	E14, MEF, Neutrophil
638857	60	CTG ...	LIS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, v6-5
639178	102	CTG ...	LGS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, v6-5
441317	150	TTG ...	LSS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
1075984	63	CTG ...	LRP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil
1086121	42	GTG ...	VWC ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
58152	60	CTG ...	LIS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1120897	42	CTG ...	LRC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF Upstream	MEF, v6-5
72983	48	TTG ...	LPE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14

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