Transcript 1062394

Transcript

ID CARD

MetamORF ID

1062394

ENSMUST00000135321

Name

Add1-206

Strand

Biotype

protein_coding

Start-end positions

34614247-34625319

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

NCBI:11518

Aliases

Add1,
AI256389, ENSMUSG00000029106, MGI:87918,
NCBI:11518, OFF:Add1

Chr 5

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
176676	201	GTG ...	VSQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	E14
181224	75	CTG ...	LDH ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF	MEF, Neutrophil, NSC, v6-5
185769	111	CTG ...	LDH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
1236759	69	AGG ...	RGR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
184210	75	CTG ...	LRR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
172635	36	TTG ...	LKL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	E14, MEF, NSC, v6-5
167453	84	ATG ...	MTL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
1238993	168	ATT ...	IRA ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	E14
169103	87	GTG ...	VMT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	E14
168972	183	TTG ...	LLV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	E14
186613	72	TTG ...	LKL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF
167353	51	TTG ...	LGS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	sORF	E14, MEF, NSC, v6-5
1238893	42	AGG ...	RNL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
185686	87	TTG ...	LGS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF
172051	219	ATG ...	MWK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	E14
176951	96	CTG ...	LAG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	E14, MEF

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