Transcript 1051836

Transcript

ID CARD

MetamORF ID

1051836

ENSMUST00000125743

Name

Ptpa-205

Strand

Biotype

retained_intron

Start-end positions

30416196-30447804

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:110854

Aliases

2610042B21Rik,
C77440, ENSMUSG00000039515, MGI:1346006,
N28142, NCBI:110854, OFF:Ptpa,
Ppp2r4, PR53, Ptpa

Chr 2

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
96471	30	CTG ...	LLC ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	BMDC, R1E, v6-5
46674	60	TTG ...	LRN ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF
100895	33	GTG ...	VAI ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	BMDC, E14, Liver, MEF, Neutrophil, R1E, v6-5
48933	45	GTG ...	VDD ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	BMDC, Liver, MEF, Neutrophil, NSC, R1E, v6-5
47608	66	TTG ...	LSL ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Intronic sORF	MEF, R1E, v6-5
44671	84	TTG ...	LMK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Neutrophil, R1E
99785	117	GTG ...	VAT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, Neutrophil, R1E
45372	105	TTG ...	LIR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Neutrophil, R1E
112000	93	CTG ...	LAA ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, Liver, MEF, Neutrophil, R1E, v6-5
1052258	63	CTG ...	LWG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
728574	33	GTG ...	VEH ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, v6-5
498341	48	CTG ...	LLE ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, v6-5
47312	81	ATG ...	MKP ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, Neutrophil, NSC, R1E
1166874	42	CTG ...	LTT ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, E14, NSC, v6-5
114550	81	GTG ...	VPE ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	BMDC, Liver, MEF, Neutrophil, R1E, v6-5
1369852	48	ATG ...	MTS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	BMDC, E14, NSC
735039	45	ATG ...	MLT ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	BMDC, NSC, v6-5
493090	30	CTG ...	LPI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
103404	147	CTG ...	LSH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, R1E
110263	87	GTG ...	VNI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
737583	33	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, R1E
499336	33	CTG ...	LLP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
110718	60	CTG ...	LKE ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	BMDC, Liver, MEF, Neutrophil, R1E, v6-5
94591	120	TTG ...	LRL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, NSC
740377	33	TTG ...	LAS ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Intronic sORF	BMDC, E14, NSC, v6-5
93003	69	CTG ...	LLS ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	MEF, R1E, v6-5
493926	60	GTG ...	VIQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1501698	30	CTG ...	LGQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	NSC
102854	108	GTG ...	VVP ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, E14, Liver, MEF, Neutrophil, R1E
101413	156	GTG ...	VVP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, R1E
93276	75	CTG ...	LEK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
112998	48	TTG ...	LGT ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, Neutrophil, R1E
93980	60	CTG ...	LQD ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
95011	165	TTG ...	LWC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
44410	69	CTG ...	LAP ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF
113518	48	GTG ...	VGN ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	BMDC, E14, Liver, MEF, Neutrophil, R1E
494475	30	TTG ...	LAE ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, v6-5
110716	120	TTG ...	LVA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Neutrophil, R1E
736061	78	CTG ...	LQA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, NSC
499171	45	CTG ...	LEA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Neutrophil, v6-5
99783	72	GTG ...	VAV ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	BMDC, Liver, MEF, Neutrophil, R1E, v6-5

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