Transcript 1045783

Transcript

ID CARD

MetamORF ID

1045783

ENSMUST00000147688

Name

Pigx-208

Strand

Biotype

nonsense_mediated_decay

Start-end positions

32084459-32099707

CDS Start-stop positions

32085323-32099569

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:72084

Aliases

2010319C14Rik,
ENSMUSG00000023791, MGI:1919334, NCBI:72084,
OFF:Pigx, PIG-X, Pigx

Chr 16

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
34050	180	TTG ...	LSN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, v6-5
371863	72	CTG ...	LLI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	E14
372704	108	CTG ...	LTI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	E14
371604	147	ATG ...	MNL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
367913	78	CTG ...	LCT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
694925	45	GTG ...	VEV ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	NMD sORF Upstream	Neutrophil
375950	132	TTG ...	LTV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF
372773	141	CTG ...	LQS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
368310	126	ATG ...	MPG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
369020	87	GTG ...	VCS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	E14
693929	42	ATG ...	MET ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
375098	114	ATG ...	MHS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1146758	45	TTG ...	LIL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	E14
373343	126	GTG ...	VQV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF
695454	39	GTG ...	VLA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	Neutrophil
372343	51	GTG ...	VVN ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, NSC, v6-5
374870	78	GTG ...	VTL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	E14
375136	102	GTG ...	VHY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
368628	51	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, v6-5
367879	222	GTG ...	VML ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
372393	114	GTG ...	VGL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	E14
368382	57	CTG ...	LCS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	E14

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