Transcript 1041341

Transcript

ID CARD

MetamORF ID

1041341

ENSMUST00000190103

Name

Nabp1-210

Strand

Biotype

nonsense_mediated_decay

Start-end positions

51468690-51478399

CDS Start-stop positions

51471245-51477915

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:109019

Aliases

4930434H03Rik,
4930442A21Rik, 4930488J04Rik, 4933440J18Rik,
5830411E10Rik, AI852561, ENSMUSG00000026107,
MGI:1923258, Nabp1, Nbp1,
NCBI:109019, Obfc2a, OFF:Nabp1,
Ssb2

Chr 1

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1128559	36	TTG ...	LYG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, v6-5
28954	111	GTG ...	VRS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, v6-5
358410	108	CTG ...	LNL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, v6-5
91853	138	GTG ...	VTK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, v6-5
1341548	39	TTG ...	LSF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF
309326	126	ATG ...	MVI ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, v6-5
956104	45	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
9384	45	GTG ...	VSQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF
1079104	51	CTG ...	LTL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, Neutrophil, v6-5
511880	54	CTG ...	LCG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, v6-5
923432	48	CTG ...	LKN ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, v6-5
359501	33	ATG ...	MPD ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, v6-5
1157479	57	GTG ...	VRS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	v6-5
311666	81	ATG ...	MAE ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, v6-5
300865	69	ATG ...	MVR ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, v6-5
39811	63	GTG ...	VWD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
472330	66	TTG ...	LLS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Neutrophil
359491	123	GTG ...	VIR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, v6-5
106092	63	ATG ...	MFV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF
1343400	54	CTG ...	LPQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	NMD Overlapping sORF Upstream	E14
346570	51	ATG ...	MFN ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
463443	81	CTG ...	LIE ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, v6-5
92890	114	CTG ...	LAL ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, v6-5
471551	63	CTG ...	LSR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Neutrophil
430044	45	ATG ...	MRS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, v6-5
1626212	36	GTG ...	VVN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
300763	42	GTG ...	VER ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, v6-5
1144637	36	TTG ...	LFF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	v6-5

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