Transcript 103139

Transcript

ID CARD

MetamORF ID

103139

ENSMUST00000111468

Name

Mtch2-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

90847178-90865388

CDS Start-stop positions

90847299-90849648

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:56428

Aliases

2310034D24Rik,
4930539J07Rik, ENSMUSG00000027282, HSPC032,
MGI:1929260, Mtch2, NCBI:56428,
OFF:Mtch2

Chr 2

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
48024	81	GTG ...	VPS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	BMDC
47527	45	CTG ...	LSQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
45476	63	TTG ...	LFF ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain
48621	78	TTG ...	LTP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Downstream NMD Overlapping sORF	BMDC, Brain
1460918	60	CTG ...	LCD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, MEF
115555	36	TTG ...	LEL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
46647	48	CTG ...	LRS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
108801	30	CTG ...	LWS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
48327	99	GTG ...	VGY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
48826	42	GTG ...	VLV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain
1680645	30	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
48857	66	CTG ...	LCS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	Brain
48509	66	CTG ...	LGS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Brain
44922	99	CTG ...	LSV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	BMDC
48352	57	TTG ...	LTY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain
49038	72	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain

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