Transcript 1015 | MetamORF

Transcript

ID CARD

MetamORF ID

1015

ENSMUST00000102590

Name

Kpna6-202

Strand

Biotype

protein_coding

Start-end positions

129643980-129672767

CDS Start-stop positions

129647992-129672680

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:16650

Aliases

ENSMUSG00000003731,
IPOA7, Kpna5, Kpna6,
MGI:1100836, NCBI:16650, NPI-2,
OFF:Kpna6

Chr 4

ORFs

49 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
546382	123	TTG ...	LKS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
899547	57	CTG ...	LKL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, E14
158805	36	CTG ...	LMA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
515080	141	TTG ...	LKS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, NSC, Spleen_B_cell
155413	111	CTG ...	LYC ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
1017173	39	TTG ...	LFA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
151929	33	ATG ...	MKK ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
1230697	54	AAG ...	KER ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
552635	30	CTG ...	LLA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF
1226084	75	AGG ...	RNQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
147119	57	CTG ...	LGS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
1228106	63	ATG ...	MLA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
549380	36	TTG ...	LSL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, v6-5
516258	60	CTG ...	LSK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, NSC, Spleen_B_cell
1232251	102	AGG ...	RKP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1228832	99	AAG ...	KKA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1233426	81	AGG ...	RNQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
556150	36	CTG ...	LLA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF
513208	30	TTG ...	LTS ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, Spleen_B_cell, v6-5
898449	36	ATT ...	IQK ...	Ribo-seq	ATT	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
1227510	84	ATA ...	IKL ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
550346	60	CTG ...	LER ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, v6-5
554419	30	TTG ...	LPP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
164474	93	ATG ...	MAW ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, v6-5
166026	138	GTG ...	VAQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC, v6-5
552556	39	CTG ...	LQV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
151791	30	CTG ...	LWP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, v6-5
900060	66	AGG ...	RLP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC
157533	48	TTG ...	LET ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Neutrophil, v6-5
555673	189	ATG ...	MQS ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
900640	81	ACG ...	TPH ...	Ribo-seq	ACG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
1508548	33	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
161144	114	GTG ...	VAS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, NSC, v6-5
1014	30	GTG ...	VGA ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, Skin_tumor, v6-5
1230800	108	AAG ...	KQS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
148050	36	CTG ...	LEI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1176904	30	TTG ...	LKQ ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
152399	84	GTG ...	VTQ ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
1225405	105	ATC ...	INP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1508650	45	CTG ...	LWV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
1232472	153	AAG ...	KKA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
155851	33	ATG ...	MAP ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Spleen_B_cell
510114	39	CTG ...	LGH ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell
146245	66	TTG ...	LPL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, v6-5
165513	162	TTG ...	LES ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, v6-5
158534	36	TTG ...	LQG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
159071	78	TTG ...	LSF ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, NSC, v6-5
1232695	126	AAG ...	KQS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
550080	72	CTG ...	LPR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Overlapping sORF Upstream	3T3

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