Transcript 100696

Transcript

ID CARD

MetamORF ID

100696

ENSMUST00000140868

Name

Snrnp200-203

Strand

Biotype

processed_transcript

Start-end positions

127221695-127225157

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:320632

Aliases

A330064G03Rik,
Ascc3l1, BC011390, ENSMUSG00000003660,
HELIC2, MGI:2444401, NCBI:320632,
OFF:Snrnp200, Snrnp200, U5-200-KD,
U5-200KD

Chr 2

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1211316	129	ATC ...	IRD ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1052795	93	CTG ...	LFL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, R1E
728376	168	ATG ...	MIL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, NSC, v6-5
740219	144	TTG ...	LSI ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
1206290	144	AAG ...	KTA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1212776	36	AAG ...	KSF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1549523	57	GTG ...	VSG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
116333	99	TTG ...	LGL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, R1E
1206700	177	ATC ...	IMN ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
107417	180	GTG ...	VLV ...	Ribo-seq	GTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
734897	48	CTG ...	LPP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, NSC, R1E, v6-5
1212619	138	ATT ...	ILE ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
1207958	54	ATG ...	MRK ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF
1213554	129	AAG ...	KKL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
107213	114	CTG ...	LEK ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, R1E
100695	174	GTG ...	VFV ...	Ribo-seq	GTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
1212303	237	GTG ...	VPL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
738508	123	CTG ...	LGR ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
1206455	210	ATC ...	ITE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
737775	39	CTG ...	LKS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, NSC, v6-5
1206143	231	CTG ...	LEQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1503179	78	CTG ...	LFL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
738201	99	GTG ...	VTC ...	Ribo-seq	GTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
1208444	54	AGG ...	RVL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
740895	42	ATG ...	MRS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	NSC
1210795	36	ATG ...	MLE ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF
739803	72	CTG ...	LFT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, NSC, v6-5

Export data