Transcript 10069 | MetamORF

Transcript

ID CARD

MetamORF ID

10069

ENSMUST00000021506

Name

Serpina3n-201

Strand

Biotype

protein_coding

Start-end positions

104406729-104414329

CDS Start-stop positions

104408671-104413606

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:20716

Aliases

ENSMUSG00000021091,
MGI:105045, NCBI:20716, OFF:Serpina3n,
Serpina3n, Spi2-2, Spi2.2,
Spi2/eb.4

Chr 12

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
664977	51	CTG ...	LPL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
663033	96	TTG ...	LGT ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
10068	36	GTG ...	VEE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver, Skin_tumor
846530	75	CTG ...	LRQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
662932	33	TTG ...	LSQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
325494	36	GTG ...	VPC ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver
661214	33	TTG ...	LTQ ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
664506	48	TTG ...	LTR ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
664011	63	CTG ...	LNI ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Liver
661084	54	CTG ...	LLP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
325069	126	CTG ...	LQN ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Liver
321591	54	CTG ...	LLP ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver
846075	33	CTG ...	LSS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
325157	69	CTG ...	LPC ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver
662415	120	CTG ...	LRQ ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
663920	33	CTG ...	LAA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Liver
846654	33	ATG ...	MRS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
665840	45	CTG ...	LES ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
846244	84	TTG ...	LSS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
660356	57	TTG ...	LTL ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver

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