Transcript 1002837

Transcript

ID CARD

MetamORF ID

1002837

ENSMUST00000139607

Name

Ttc3-210

Strand

Biotype

retained_intron

Start-end positions

94440093-94448745

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAC ...

Genome browsers

UCSC

Gene

NCBI:22129

Aliases

2610202A04Rik,
AA409221, D16Ium21, D16Ium21e,
ENSMUSG00000040785, MGI:1276539, mKIAA4119,
NCBI:22129, OFF:Ttc3, TPRD,
Ttc3

Chr 16

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
372366	36	CTG ...	LSR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	NSC
1539526	57	CTG ...	LRE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF
1495525	87	CTG ...	LGS ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, NSC
1494688	33	ATG ...	MPL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	NSC
1540400	48	CTG ...	LSI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
375816	270	CTG ...	LTL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, E14
1495638	57	CTG ...	LHI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, NSC
1002836	123	GTG ...	VSR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
373481	48	GTG ...	VEQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	NSC
1003351	63	CTG ...	LEE ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, E14
373874	138	TTG ...	LAS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
373062	54	ATG ...	MSV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	NSC
1003489	51	CTG ...	LQR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1539662	81	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1495249	39	ATG ...	MKM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	NSC
1621252	36	GTG ...	VGA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
1003349	126	CTG ...	LKV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, NSC
1186096	51	TTG ...	LKT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, E14
1187795	48	AGG ...	RKS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
373980	81	CTG ...	LKH ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, NSC
1495332	45	GTG ...	VSG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, NSC
372856	243	ATG ...	MLL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
371882	63	GTG ...	VSL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
12362	96	CTG ...	LRA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
373419	99	CTG ...	LVT ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, E14
372886	216	CTG ...	LKK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
695497	39	GTG ...	VPP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, NSC
1621407	42	TTG ...	LPQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
375935	96	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
369355	96	GTG ...	VTT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
368680	249	GTG ...	VRM ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain

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