Transcript 99294 | MetamORF

Transcript

ID CARD

MetamORF ID

99294

ENST00000463816

Name

ZNF511-203

Strand

Biotype

processed_transcript

Start-end positions

133309440-133313117

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

HGNC:28445

Aliases

ENSG00000198546,
HGNC:28445, MGC30006, NCBI:118472,
OFF:ZNF511, ZNF511

Chr 10

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
900257	153	GTT ...	VCS ...	Ribo-seq	GTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
99308	96	CTG ...	LEW ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293
99314	51	CTG ...	LYP ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
1296312	156	CTG ...	LPG ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	HEK293, HEK293T, HeLa, MDA-MB-231
900253	297	ACC ...	TTR ...	Ribo-seq	ACC		1	sORFs_org_Human	ncRNA sORF	Jurkat
2304930	159	CTG ...	LLP ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, MDA-MB-231
3199689	84	TGT ...	CTP ...	Ribo-seq	TGT		1	sORFs_org_Human	ncRNA sORF	HEK293
1501579	33	CTG ...	LLW ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	ncRNA sORF	BJ, Blood, hES, MDA-MB-231, RPE-1
1720195	93	TTG ...	LLL ...	Ribo-seq	TTG		4	sORFs_org_Human	ncRNA sORF	Blood, HeLa, hES, MDA-MB-231
99302	165	CTG ...	LHG ...	Ribo-seq	CTG		7	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES
99304	114	CTG ...	LLD ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293
1984322	84	CTG ...	LHR ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, MDA-MB-231
900250	168	GGT ...	GGR ...	Ribo-seq	GGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
1296309	174	CTG ...	LPG ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	HEK293, HEK293T, HeLa, MDA-MB-231
99296	225	GTG ...	VAG ...	Ribo-seq	GTG		10	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, MDA-MB-231, THP-1
900259	42	CAT ...	HPG ...	Ribo-seq	CAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
900255	99	AAA ...	KCL ...	Ribo-seq	AAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
1984319	99	GTG ...	VLG ...	Ribo-seq	GTG	weak	5	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, MDA-MB-231
99312	63	GTG ...	VRM ...	Ribo-seq	GTG		13	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, hES, Jurkat, MDA-MB-231, RPE-1, U2OS
99298	207	GTG ...	VFD ...	Ribo-seq	GTG		9	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, THP-1
900261	117	GTA ...	VEG ...	Ribo-seq	GTA		1	sORFs_org_Human	ncRNA sORF	Jurkat
1203329	33	GTG ...	VAR ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HeLa, hES, MDA-MB-231
99306	111	CTG ...	LDA ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293
99293	246	GTG ...	VPA ...	Ribo-seq	GTG		10	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, MDA-MB-231, THP-1
2304941	120	GTG ...	VES ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
99310	120	TTG ...	LVE ...	Ribo-seq	TTG		18	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
1720197	84	TTG ...	LQA ...	Ribo-seq	TTG		4	sORFs_org_Human	ncRNA sORF	Blood, HeLa, hES, MDA-MB-231
99300	195	CTG ...	LDD ...	Ribo-seq	CTG		10	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, Jurkat, THP-1

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