Transcript 10480 | MetamORF

Transcript

ID CARD

MetamORF ID

10480

ENST00000474142

Name

ZMPSTE24-203

Strand

Biotype

retained_intron

Start-end positions

40290645-40292621

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTA ...

Genome browsers

UCSC

Gene

HGNC:12877

Aliases

ENSG00000084073,
FACE-1, HGNC:12877, HGPS,
NCBI:10269, OFF:ZMPSTE24, PRO1,
STE24, Ste24p, ZMPSTE24

Chr 1

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3200824	75	CCC ...	PTL ...	Ribo-seq	CCC		1	sORFs_org_Human	Intronic sORF	HEK293
107617	51	TTG ...	LLH ...	Ribo-seq	TTG	weak	9	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1, U2OS
107629	45	TTG ...	LPR ...	Ribo-seq	TTG	weak	16	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
920342	141	TTT ...	FLF ...	Ribo-seq	TTT		1	sORFs_org_Human	Intronic sORF	Jurkat
920321	78	GAA ...	EFF ...	Ribo-seq	GAA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
541039	42	TTG ...	LVF ...	Ribo-seq	TTG	moderate	9	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1, U2OS
10479	150	CTG ...	LCF ...	Ribo-seq	CTG		24	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
3200831	105	AAC ...	NLG ...	Ribo-seq	AAC		1	sORFs_org_Human	Intronic sORF	HEK293
920416	183	TTT ...	FQA ...	Ribo-seq	TTT		1	sORFs_org_Human	Intronic sORF	Jurkat
920357	30	ATA ...	IAN ...	Ribo-seq	ATA	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
541034	48	CTG ...	LHL ...	Ribo-seq	CTG	weak	9	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1, U2OS
10484	57	TTG ...	LII ...	Ribo-seq	TTG		12	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
920384	39	TCA ...	SSS ...	Ribo-seq	TCA		1	sORFs_org_Human	Intronic sORF	Jurkat
541045	33	ATG ...	MIA ...	Ribo-seq	ATG	weak	11	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
300106	96	ATG ...	MSF ...	Ribo-seq	ATG	weak	8	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, LCL, MM1S, RPE-1, THP-1, U2OS
107623	66	TTG ...	LSF ...	Ribo-seq	TTG	moderate	17	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
920366	51	TCT ...	SYW ...	Ribo-seq	TCT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
541024	69	TTG ...	LVE ...	Ribo-seq	TTG	moderate	11	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, Jurkat, MDA-MB-231, RPE-1, THP-1, U2OS
920396	30	AGT ...	SLF ...	Ribo-seq	AGT		1	sORFs_org_Human	Intronic sORF	Jurkat
10482	66	GTG ...	VFF ...	Ribo-seq	GTG	weak	14	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, LCL, MM1S, RPE-1, THP-1, U2OS
107625	54	CTG ...	LMH ...	Ribo-seq	CTG	moderate	17	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
107627	51	ATG ...	MHL ...	Ribo-seq	ATG	weak	15	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, THP-1, U2OS
920379	45	TGG ...	WTI ...	Ribo-seq	TGG	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
411026	72	TCA ...	SMW ...	Ribo-seq	TCA		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
10491	30	TTG ...	LPN ...	Ribo-seq	TTG	weak	13	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1, U2OS
300163	33	TTG ...	LGR ...	Ribo-seq	TTG	strong	9	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, U2OS

Export data