Transcript 5614 | MetamORF

Transcript

ID CARD

MetamORF ID

5614

ENST00000478828

Name

YARS-206

Strand

Biotype

processed_transcript

Start-end positions

32775991-32786734

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATA ...

Genome browsers

UCSC

Gene

HGNC:12840

Aliases

ENSG00000134684,
HGNC:12840, NCBI:8565, OFF:YARS,
tyrRS, YARS, YRS,
YTS

Chr 1

ORFs

36 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5634	48	ATG ...	MRS ...	Ribo-seq	ATG		29	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5731	180	CTG ...	LYV ...	Ribo-seq	CTG		31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
907299	93	GAG ...	EEC ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
408543	159	GGT ...	GEH ...	Ribo-seq	GGT		3	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, Jurkat
5691	75	GTG ...	VLC ...	Ribo-seq	GTG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
103221	144	GTG ...	VKG ...	Ribo-seq	GTG		9	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, guo_2014, HCT116, HEK293, HEK293T, Jurkat
5642	186	CTG ...	LDP ...	Ribo-seq	CTG		18	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MM1S, U2OS
5709	96	CTG ...	LQD ...	Ribo-seq	CTG		31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
907321	120	CCA ...	PDE ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
408583	57	CCC ...	PQK ...	Ribo-seq	CCC		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
5736	45	CTG ...	LAA ...	Ribo-seq	CTG		17	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1, U2OS
5716	111	GTG ...	VPK ...	Ribo-seq	GTG		32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5718	123	CTG ...	LVQ ...	Ribo-seq	CTG		31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
533989	60	GTG ...	VHR ...	Ribo-seq	GTG	moderate	12	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
5725	132	GTG ...	VSG ...	Ribo-seq	GTG		31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
482744	57	CTG ...	LTS ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
5729	159	GTG ...	VGE ...	Ribo-seq	GTG		32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5675	72	CTG ...	LCN ...	Ribo-seq	CTG		28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5644	54	TTG ...	LNL ...	Ribo-seq	TTG	moderate	13	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, MDA-MB-231, MM1S, RPE-1
408532	132	GAA ...	EKG ...	Ribo-seq	GAA		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
5700	84	CTG ...	LVV ...	Ribo-seq	CTG		31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5695	78	GTG ...	VVL ...	Ribo-seq	GTG		28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5666	63	CTG ...	LKP ...	Ribo-seq	CTG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
408522	48	AAA ...	KFL ...	Ribo-seq	AAA	weak	1	sORFs_org_Human	ncRNA sORF	HCT116
533987	48	GTG ...	VEA ...	Ribo-seq	GTG	strong	9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, Jurkat, MDA-MB-231, RPE-1, U2OS
907305	93	AAA ...	KVF ...	Ribo-seq	AAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
907301	111	GCT ...	ADF ...	Ribo-seq	GCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
907311	48	CAA ...	QAQ ...	Ribo-seq	CAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
5613	66	TTG ...	LSR ...	Ribo-seq	TTG		21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
482741	42	CTG ...	LRS ...	Ribo-seq	CTG	weak	12	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1
907383	207	ATA ...	INR ...	Ribo-seq	ATA		1	sORFs_org_Human	ncRNA sORF	Jurkat
5640	150	GTG ...	VFV ...	Ribo-seq	GTG		10	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, guo_2014, HEK293, HEK293T, hES
534090	36	TTG ...	LTW ...	Ribo-seq	TTG	moderate	11	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, loayza_puch_2016, MDA-MB-231, U2OS
907377	198	CAG ...	QVE ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
5727	135	GTG ...	VVS ...	Ribo-seq	GTG		31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5636	66	ATG ...	MKR ...	Ribo-seq	ATG		28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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