Transcript 752 | MetamORF

Transcript

ID CARD

MetamORF ID

752

ENST00000502935

Name

XPNPEP1-218

Strand

Biotype

protein_coding

Start-end positions

109864766-109923553

CDS Start-stop positions

109865184-109923433

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

HGNC:12822

Aliases

ENSG00000108039,
HGNC:12822, NCBI:7511, OFF:XPNPEP1,
XPNPEP, XPNPEP1, XPNPEPL,
XPNPEPL1

Chr 10

ORFs

4 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
99433	42	TTG ...	LTR ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa, hES, MDA-MB-231
279618	99	TTG ...	LLG ...	Ribo-seq	TTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, LCL, MDA-MB-231
751	84	CTG ...	LRR ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HeLa, MDA-MB-231
99435	57	ATG ...	MRC ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa, MDA-MB-231

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