Transcript 2573 | MetamORF

Transcript

ID CARD

MetamORF ID

2573

ENST00000524549

Name

WEE1-203

Strand

Biotype

retained_intron

Start-end positions

9575490-9581487

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

HGNC:12761

Aliases

ENSG00000166483,
HGNC:12761, NCBI:7465, OFF:WEE1,
WEE1, WEE1A

Chr 11

ORFs

38 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
904247	48	ACA ...	TAF ...	Ribo-seq	ACA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
283045	99	TTG ...	LIP ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Intronic sORF	Blood, HeLa, hES, LCL, MDA-MB-231
2575	90	GTG ...	VNI ...	Ribo-seq	GTG		23	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
904233	51	AGT ...	SVV ...	Ribo-seq	AGT		1	sORFs_org_Human	Intronic sORF	Jurkat
3221080	78	CTG ...	LRG ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
2572	108	GTG ...	VRQ ...	Ribo-seq	GTG		24	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
283055	60	GTG ...	VKT ...	Ribo-seq	GTG		4	sORFs_org_Human	Intronic sORF	Blood, hES, LCL, MDA-MB-231
904235	57	AAG ...	KTW ...	Ribo-seq	AAG		1	sORFs_org_Human	Intronic sORF	Jurkat
2579	57	TTG ...	LLH ...	Ribo-seq	TTG		17	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
1723269	30	TTG ...	LKM ...	Ribo-seq	TTG		3	sORFs_org_Human	Intronic sORF	Blood, hES, MDA-MB-231
406753	57	TGG ...	WIQ ...	Ribo-seq	TGG	weak	1	sORFs_org_Human	Intronic sORF	HCT116
1723273	69	ATG ...	MDA ...	Ribo-seq	ATG		2	sORFs_org_Human	Intronic sORF	Blood, MDA-MB-231
904231	63	ATT ...	IPQ ...	Ribo-seq	ATT		1	sORFs_org_Human	Intronic sORF	Jurkat
283043	144	TTG ...	LYF ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	Intronic sORF	Blood, hES, LCL, MDA-MB-231
2584	120	TTG ...	LRE ...	Ribo-seq	TTG	moderate	16	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
2577	60	TTG ...	LLL ...	Ribo-seq	TTG		20	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
3199977	138	ACA ...	TEK ...	Ribo-seq	ACA		1	sORFs_org_Human	Intronic sORF	HEK293
904241	123	ATT ...	IKR ...	Ribo-seq	ATT		1	sORFs_org_Human	Intronic sORF	Jurkat
2586	96	GTG ...	VLG ...	Ribo-seq	GTG	moderate	15	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
904229	42	GGA ...	GFF ...	Ribo-seq	GGA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
283047	87	CTG ...	LLN ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Intronic sORF	Blood, hES, LCL, MDA-MB-231
904245	63	TCA ...	SCS ...	Ribo-seq	TCA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
904225	102	GAA ...	ELI ...	Ribo-seq	GAA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
904249	69	CAG ...	QKM ...	Ribo-seq	CAG	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
633863	36	ATG ...	MLM ...	Ribo-seq	ATG	weak	5	sORFs_org_Human	Intronic sORF	Blood, HeLa, hES, MDA-MB-231, THP-1
904239	57	ATG ...	MPL ...	Ribo-seq	ATG		3	sORFs_org_Human	Intronic sORF	Blood, hES, Jurkat
283041	150	TTG ...	LYL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Intronic sORF	Blood, LCL
1723271	39	GTG ...	VCE ...	Ribo-seq	GTG	weak	6	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
1723266	42	GTG ...	VIM ...	Ribo-seq	GTG		4	sORFs_org_Human	Intronic sORF	Blood, hES, MDA-MB-231
904227	33	GGA ...	GYR ...	Ribo-seq	GGA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
283057	33	CTG ...	LEN ...	Ribo-seq	CTG	strong	4	sORFs_org_Human	Intronic sORF	hES, LCL, MDA-MB-231, RPE-1
904253	42	ATG ...	MNI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
904237	63	GCA ...	AFM ...	Ribo-seq	GCA		1	sORFs_org_Human	Intronic sORF	Jurkat
904251	39	CAT ...	HML ...	Ribo-seq	CAT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
904243	45	GAG ...	EKY ...	Ribo-seq	GAG	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
1094347	36	ATG ...	MSL ...	Ribo-seq	ATG		4	sORFs_org_Human	Intronic sORF	Blood, HEK293, hES, MDA-MB-231
633865	30	ATG ...	MQC ...	Ribo-seq	ATG	weak	5	sORFs_org_Human	Intronic sORF	Blood, HeLa, hES, MDA-MB-231, THP-1
283053	63	GTG ...	VVK ...	Ribo-seq	GTG		4	sORFs_org_Human	Intronic sORF	Blood, hES, LCL, MDA-MB-231

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