Transcript 1032 | MetamORF

Transcript

ID CARD

MetamORF ID

1032

ENST00000637053

Name

VIM-210

Strand

Biotype

processed_transcript

Start-end positions

17230654-17234124

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

HGNC:12692

Aliases

ENSG00000026025,
HGNC:12692, NCBI:7431, OFF:VIM,
VIM

Chr 10

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1031	285	GTG ...	VES ...	Ribo-seq	GTG		30	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MM1S, Monocyte, RPE-1, THP-1, U2OS
1034	276	TTG ...	LQE ...	Ribo-seq	TTG		29	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MM1S, Monocyte, RPE-1, THP-1, U2OS
893859	99	ACC ...	TLQ ...	Ribo-seq	ACC		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
1036	255	TTG ...	LKK ...	Ribo-seq	TTG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, Monocyte, THP-1, U2OS
2615942	279	TCT ...	SLQ ...	Ribo-seq	TCT		2	sORFs_org_Human	ncRNA sORF	HeLa, THP-1
1301345	69	AGG ...	RFV ...	Ribo-seq	AGG		1	sORFs_org_Human	ncRNA sORF	BJ
900946	291	CGC ...	RKV ...	Ribo-seq	CGC		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
893857	45	AGA ...	RGS ...	Ribo-seq	AGA		5	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, Jurkat, THP-1
893855	117	AGA ...	RCF ...	Ribo-seq	AGA		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
893861	90	TCT ...	SFR ...	Ribo-seq	TCT		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1

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