Transcript 94681 | MetamORF

Transcript

ID CARD

MetamORF ID

94681

ENST00000495528

Name

VIM-207

Strand

Biotype

retained_intron

Start-end positions

17233225-17235034

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

HGNC:12692

Aliases

ENSG00000026025,
HGNC:12692, NCBI:7431, OFF:VIM,
VIM

Chr 10

ORFs

70 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
94689	105	CTG ...	LAR ...	Ribo-seq	CTG		34	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
94687	69	ATG ...	MRL ...	Ribo-seq	ATG	moderate	34	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
94723	54	GTG ...	VWL ...	Ribo-seq	GTG		35	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
2615480	228	CAG ...	QEL ...	Ribo-seq	CAG		2	sORFs_org_Human	Intronic sORF	HeLa, THP-1
893869	84	CGC ...	RKV ...	Ribo-seq	CGC		3	sORFs_org_Human	Intronic sORF	HeLa, Jurkat, THP-1
94745	30	GTG ...	VKW ...	Ribo-seq	GTG	weak	30	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
1301347	54	GTC ...	VLT ...	Ribo-seq	GTC	weak	1	sORFs_org_Human	Intronic sORF	BJ
893865	48	ACC ...	TLN ...	Ribo-seq	ACC	weak	3	sORFs_org_Human	Intronic sORF	HeLa, Jurkat, THP-1
94733	126	CTG ...	LTS ...	Ribo-seq	CTG	weak	34	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
94717	150	CTG ...	LRD ...	Ribo-seq	CTG		18	sORFs_org_Human	Intronic sORF	BJ, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, MM1S, Monocyte
893891	51	TGG ...	WLP ...	Ribo-seq	TGG		3	sORFs_org_Human	Intronic sORF	HeLa, Jurkat, THP-1
1301364	105	CAG ...	QES ...	Ribo-seq	CAG	strong	3	sORFs_org_Human	Intronic sORF	BJ, HeLa, THP-1
1045899	294	CTG ...	LKI ...	Ribo-seq	CTG		5	sORFs_org_Human	Intronic sORF	BJ, guo_2014, HEK293, Monocyte
94713	99	CTG ...	LTS ...	Ribo-seq	CTG		34	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
94727	171	TTG ...	LNV ...	Ribo-seq	TTG		31	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, Monocyte, RPE-1, THP-1, U2OS
94737	111	CTG ...	LPT ...	Ribo-seq	CTG	moderate	34	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
96454	120	GTG ...	VAA ...	Ribo-seq	GTG		10	sORFs_org_Human	Intronic sORF	BJ, Brain, guo_2014, HEK293, HeLa, Monocyte
94741	120	CTG ...	LRQ ...	Ribo-seq	CTG	moderate	33	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, Monocyte, RPE-1, THP-1, U2OS
3199184	216	GCT ...	AQI ...	Ribo-seq	GCT		1	sORFs_org_Human	Intronic sORF	HEK293
94739	96	ATG ...	MTP ...	Ribo-seq	ATG	moderate	32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
94705	129	ATG ...	MSK ...	Ribo-seq	ATG		34	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
2615494	156	GAC ...	DLS ...	Ribo-seq	GAC	moderate	2	sORFs_org_Human	Intronic sORF	HeLa, THP-1
94719	78	GTG ...	VTY ...	Ribo-seq	GTG		35	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
3199189	69	GTC ...	VSN ...	Ribo-seq	GTC		1	sORFs_org_Human	Intronic sORF	HEK293
94680	108	ATG ...	MSC ...	Ribo-seq	ATG	weak	30	sORFs_org_Human	Intronic sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, Monocyte, RPE-1, THP-1, U2OS
3199191	123	AGT ...	SVA ...	Ribo-seq	AGT		1	sORFs_org_Human	Intronic sORF	HEK293
94695	78	GTG ...	VES ...	Ribo-seq	GTG		32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, Monocyte, RPE-1, THP-1, U2OS
94735	117	CTG ...	LRL ...	Ribo-seq	CTG	weak	34	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
94691	51	TTG ...	LTL ...	Ribo-seq	TTG	moderate	31	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
94743	63	CTG ...	LST ...	Ribo-seq	CTG	weak	29	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
893899	78	CAA ...	QSR ...	Ribo-seq	CAA	moderate	4	sORFs_org_Human	Intronic sORF	HEK293, HeLa, Jurkat, THP-1
94707	117	ATG ...	MWM ...	Ribo-seq	ATG		34	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
893901	45	TGC ...	CSP ...	Ribo-seq	TGC	moderate	2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
893863	102	GCA ...	ARL ...	Ribo-seq	GCA		4	sORFs_org_Human	Intronic sORF	HEK293, HeLa, Jurkat, THP-1
94715	87	CTG ...	LPC ...	Ribo-seq	CTG		35	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
94703	222	CTG ...	LQA ...	Ribo-seq	CTG		32	sORFs_org_Human	Intronic sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, Monocyte, RPE-1, THP-1, U2OS
94721	60	ATG ...	MKV ...	Ribo-seq	ATG		35	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
1437773	105	CTG ...	LQE ...	Ribo-seq	CTG		3	sORFs_org_Human	Intronic sORF	HeLa, Monocyte
94731	129	TTG ...	LLT ...	Ribo-seq	TTG	moderate	34	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
94697	69	TTG ...	LQE ...	Ribo-seq	TTG		29	sORFs_org_Human	Intronic sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, Monocyte, RPE-1, THP-1, U2OS
893877	69	AAT ...	NPG ...	Ribo-seq	AAT	moderate	4	sORFs_org_Human	Intronic sORF	BJ, HeLa, Jurkat, THP-1
1301354	33	TGT ...	CPN ...	Ribo-seq	TGT	moderate	4	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, THP-1
893881	135	AAC ...	NSM ...	Ribo-seq	AAC		4	sORFs_org_Human	Intronic sORF	BJ, HeLa, Jurkat, THP-1
893893	150	TCT ...	SEA ...	Ribo-seq	TCT	moderate	4	sORFs_org_Human	Intronic sORF	HEK293, HeLa, Jurkat, THP-1
893897	93	ACG ...	TPC ...	Ribo-seq	ACG	moderate	3	sORFs_org_Human	Intronic sORF	BJ, HEK293, Jurkat
96466	78	GTG ...	VQS ...	Ribo-seq	GTG	weak	18	sORFs_org_Human	Intronic sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MM1S, Monocyte, U2OS
1045901	282	ATG ...	MSV ...	Ribo-seq	ATG		5	sORFs_org_Human	Intronic sORF	BJ, guo_2014, HEK293, Monocyte
94699	135	ATG ...	MNE ...	Ribo-seq	ATG		17	sORFs_org_Human	Intronic sORF	BJ, Brain, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, Monocyte
893875	66	CAA ...	QEE ...	Ribo-seq	CAA		3	sORFs_org_Human	Intronic sORF	HeLa, Jurkat, THP-1
893883	123	AAA ...	KSM ...	Ribo-seq	AAA		4	sORFs_org_Human	Intronic sORF	BJ, HeLa, Jurkat, THP-1
1402009	48	TTG ...	LKK ...	Ribo-seq	TTG		5	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, HFF, Monocyte
893873	72	TCT ...	SLQ ...	Ribo-seq	TCT		3	sORFs_org_Human	Intronic sORF	HeLa, Jurkat, THP-1
2615491	57	AAA ...	KVW ...	Ribo-seq	AAA		2	sORFs_org_Human	Intronic sORF	HeLa, THP-1
2615498	123	GCC ...	ALR ...	Ribo-seq	GCC	moderate	2	sORFs_org_Human	Intronic sORF	HeLa, THP-1
1301359	108	CCA ...	PTG ...	Ribo-seq	CCA	weak	3	sORFs_org_Human	Intronic sORF	BJ, HeLa, THP-1
94709	183	GTG ...	VDV ...	Ribo-seq	GTG		27	sORFs_org_Human	Intronic sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MM1S, Monocyte, U2OS
893885	153	GCC ...	ALR ...	Ribo-seq	GCC		5	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, Jurkat, THP-1
94729	165	GTG ...	VSN ...	Ribo-seq	GTG		31	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, Monocyte, RPE-1, THP-1, U2OS
893879	45	TCA ...	SGT ...	Ribo-seq	TCA	strong	2	sORFs_org_Human	Intronic sORF	BJ, Jurkat
94725	48	CTG ...	LPR ...	Ribo-seq	CTG		35	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
893895	144	GCT ...	AAN ...	Ribo-seq	GCT	strong	2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
94685	75	TTG ...	LTM ...	Ribo-seq	TTG	moderate	34	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
94701	90	CTG ...	LSV ...	Ribo-seq	CTG		32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, Monocyte, RPE-1, THP-1, U2OS
2615482	219	CAG ...	QAQ ...	Ribo-seq	CAG		2	sORFs_org_Human	Intronic sORF	HeLa, THP-1
893871	57	AGT ...	SGI ...	Ribo-seq	AGT		4	sORFs_org_Human	Intronic sORF	BJ, HeLa, Jurkat, THP-1
94693	45	TTG ...	LNA ...	Ribo-seq	TTG	moderate	31	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
94711	111	ATG ...	MFP ...	Ribo-seq	ATG		34	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
94683	78	ATG ...	MLT ...	Ribo-seq	ATG	moderate	34	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
2615484	48	GAT ...	DSG ...	Ribo-seq	GAT	weak	3	sORFs_org_Human	Intronic sORF	HEK293, HeLa, THP-1
893887	75	ACG ...	TYV ...	Ribo-seq	ACG		4	sORFs_org_Human	Intronic sORF	BJ, HeLa, Jurkat, THP-1

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