Transcript 2851 | MetamORF

Transcript

ID CARD

MetamORF ID

2851

ENST00000535077

Name

TSG101-203

Strand

Biotype

processed_transcript

Start-end positions

18506866-18526920

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

HGNC:15971

Aliases

ENSG00000074319,
HGNC:15971, NCBI:7251, OFF:TSG101,
TSG10, TSG101, VPS23

Chr 11

ORFs

37 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
905094	105	TTG ...	LEM ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	HEK293, hES, Jurkat
2855	120	TTG ...	LLG ...	Ribo-seq	TTG		21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
2850	93	GTG ...	VVF ...	Ribo-seq	GTG		19	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
1316264	45	ATG ...	MGR ...	Ribo-seq	ATG		4	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, MDA-MB-231
1316270	57	ATG ...	MLM ...	Ribo-seq	ATG		4	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, MDA-MB-231
905118	54	CAA ...	QCY ...	Ribo-seq	CAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
2543655	117	CTG ...	LKF ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293, hES
1046989	30	TTG ...	LLF ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES
2853	117	TTG ...	LGL ...	Ribo-seq	TTG		21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
406970	90	GTA ...	VFG ...	Ribo-seq	GTA		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
1297059	48	ATG ...	MRF ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	HEK293T
1504827	123	TTG ...	LCG ...	Ribo-seq	TTG		5	sORFs_org_Human	ncRNA sORF	BJ, HEK293, MDA-MB-231, MM1S, RPE-1
905110	57	ACT ...	TGT ...	Ribo-seq	ACT		1	sORFs_org_Human	ncRNA sORF	Jurkat
905124	42	CGG ...	RCR ...	Ribo-seq	CGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
1504829	129	GTG ...	VRL ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	BJ, MDA-MB-231, RPE-1
905120	60	AAC ...	NCQ ...	Ribo-seq	AAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
905099	114	GGG ...	GLI ...	Ribo-seq	GGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
1316268	54	TTG ...	LMQ ...	Ribo-seq	TTG		5	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231
2543646	99	ATG ...	MNL ...	Ribo-seq	ATG		2	sORFs_org_Human	ncRNA sORF	HEK293, hES
406972	96	ACT ...	TIK ...	Ribo-seq	ACT		4	sORFs_org_Human	ncRNA sORF	HCT116, HeLa, Jurkat, THP-1
905122	147	CTG ...	LYV ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
905088	57	CGC ...	RHT ...	Ribo-seq	CGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
2857	153	CTG ...	LDT ...	Ribo-seq	CTG		20	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
905097	114	TTG ...	LWY ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
936619	30	TTG ...	LDS ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	Brain
905108	180	TAC ...	YNI ...	Ribo-seq	TAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
905102	111	CCT ...	PTS ...	Ribo-seq	CCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
905114	90	AAC ...	NDG ...	Ribo-seq	AAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
905126	222	GCC ...	AQQ ...	Ribo-seq	GCC		1	sORFs_org_Human	ncRNA sORF	Jurkat
527181	81	CTG ...	LPA ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, U2OS
905104	150	GAC ...	DTY ...	Ribo-seq	GAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
905112	75	AGG ...	REL ...	Ribo-seq	AGG		3	sORFs_org_Human	ncRNA sORF	HeLa, Jurkat, THP-1
905090	69	CGG ...	RHP ...	Ribo-seq	CGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
1316266	51	ATG ...	MQM ...	Ribo-seq	ATG		5	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231
905092	78	GTC ...	VLF ...	Ribo-seq	GTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
905116	48	AAA ...	KDL ...	Ribo-seq	AAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
905106	33	ATG ...	MPM ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	ncRNA sORF	Blood, HEK293, Jurkat, MDA-MB-231

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