Transcript 7867 | MetamORF

Transcript

ID CARD

MetamORF ID

7867

ENST00000251968

Name

TSG101-201

Strand

Biotype

protein_coding

Start-end positions

18480311-18527232

CDS Start-stop positions

18480546-18526816

CDS Relative positions

Sequences

Transcript sequence

AAT ...

Genome browsers

UCSC

Gene

HGNC:15971

Aliases

ENSG00000074319,
HGNC:15971, NCBI:7251, OFF:TSG101,
TSG10, TSG101, VPS23

Chr 11

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1511544	138	TTG ...	LCG ...	Ribo-seq	TTG		4	sORFs_org_Human	Overlapping sORF Upstream	BJ, MDA-MB-231, MM1S, RPE-1
915781	57	CGG ...	RCR ...	Ribo-seq	CGG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
637961	222	ATG ...	MNL ...	Ribo-seq	ATG		9	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
637963	228	TTG ...	LEM ...	Ribo-seq	TTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
1819788	51	GTG ...	VTS ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa
1819786	30	CTG ...	LTS ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa
1730857	120	CTG ...	LEQ ...	Ribo-seq	CTG		6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
1730855	108	CTG ...	LCL ...	Ribo-seq	CTG		6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
637959	126	GTG ...	VES ...	Ribo-seq	GTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
905106	33	ATG ...	MPM ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
104955	33	ATG ...	MFL ...	Ribo-seq	ATG		17	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1
637965	237	TTG ...	LWY ...	Ribo-seq	TTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
1723734	63	ATG ...	MAQ ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1730849	84	ATG ...	MQM ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
7866	81	CTG ...	LLV ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
1046981	36	ATG ...	MYV ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231
1730842	189	GTG ...	VKK ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
1511546	144	GTG ...	VRL ...	Ribo-seq	GTG		4	sORFs_org_Human	Overlapping sORF Upstream	BJ, MDA-MB-231, MM1S, RPE-1
292977	78	ATG ...	MLL ...	Ribo-seq	ATG		12	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1
1723732	105	ATG ...	MKN ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
292975	48	CTG ...	LFW ...	Ribo-seq	CTG		12	sORFs_org_Human	InCDS Overlapping sORF	Blood, Brain, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1
292979	84	CTG ...	LSM ...	Ribo-seq	CTG		13	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1
292981	90	GTG ...	VKL ...	Ribo-seq	GTG		13	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1
1730851	87	TTG ...	LMQ ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
292983	96	CTG ...	LYV ...	Ribo-seq	CTG		16	sORFs_org_Human	InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1
1730853	90	ATG ...	MLM ...	Ribo-seq	ATG		5	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
3313291	1173	ATG ...	MAV ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
292971	78	TTG ...	LVP ...	Ribo-seq	TTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
1204858	54	ATG ...	MQK ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
283698	63	CTG ...	LPV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa, LCL
1730847	78	ATG ...	MGR ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
3200077	33	GCA ...	AKS ...	Ribo-seq	GCA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293

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