Transcript 4801 | MetamORF

Transcript

ID CARD

MetamORF ID

4801

ENST00000539854

Name

TRMT112-205

Strand

Biotype

protein_coding

Start-end positions

64316696-64317553

CDS Start-stop positions

64317007-64317526

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

HGNC:26940

Aliases

ENSG00000173113,
HGNC:26940, HSPC152, HSPC170,
hTrm112, NCBI:51504, OFF:TRMT112,
TRM112, TRMT11-2, TRMT112

Chr 11

ORFs

8 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2957148	63	ATG ...	MTP ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative Downstream sORF	hES
407966	39	GGC ...	GRL ...	Ribo-seq	GGC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
4800	33	TTG ...	LRD ...	Ribo-seq	TTG	weak	30	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4805	48	CTG ...	LPC ...	Ribo-seq	CTG	weak	35	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
287082	30	GTG ...	VVG ...	Ribo-seq	GTG	strong	13	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, LCL, loayza_puch_2016, MDA-MB-231, THP-1, U2OS
4803	36	CTG ...	LWN ...	Ribo-seq	CTG	moderate	32	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2957146	48	GTG ...	VFL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	hES
529504	171	GTG ...	VAS ...	Ribo-seq	GTG		12	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MM1S, RPE-1, U2OS

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