Transcript 4216 | MetamORF

Transcript

ID CARD

MetamORF ID

4216

ENST00000540434

Name

TMEM258-205

Strand

Biotype

retained_intron

Start-end positions

61790097-61792602

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

HGNC:1164

Aliases

C11orf10,
ENSG00000134825, HGNC:1164, Kud,
Kuduk, NCBI:746, OFF:TMEM258,
TMEM258

Chr 11

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
286114	39	GTG ...	VYP ...	Ribo-seq	GTG	weak	10	sORFs_org_Human	Intronic sORF	BJ, Blood, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
286125	174	CTG ...	LKS ...	Ribo-seq	CTG		18	sORFs_org_Human	Intronic sORF	Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
286123	156	TTG ...	LIA ...	Ribo-seq	TTG		25	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
407668	93	CAT ...	HLT ...	Ribo-seq	CAT	weak	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
907994	63	CGT ...	RGA ...	Ribo-seq	CGT	strong	3	sORFs_org_Human	Intronic sORF	HeLa, Jurkat, THP-1
2616366	108	CAG ...	QIY ...	Ribo-seq	CAG	moderate	2	sORFs_org_Human	Intronic sORF	HeLa, THP-1
4218	81	GTG ...	VLL ...	Ribo-seq	GTG	moderate	28	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3314632	150	ATG ...	MEL ...	Predicted	ATG		1	Mackowiak2015	Intronic sORF
528719	42	GTG ...	VAE ...	Ribo-seq	GTG		12	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, U2OS
4220	84	GTG ...	VVL ...	Ribo-seq	GTG	strong	28	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
286121	147	CTG ...	LIS ...	Ribo-seq	CTG		26	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4215	75	TTG ...	LAI ...	Ribo-seq	TTG	moderate	26	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
907999	105	ATA ...	IYQ ...	Ribo-seq	ATA	weak	5	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, Jurkat, THP-1
4222	90	CTG ...	LTV ...	Ribo-seq	CTG	weak	31	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
407672	102	GTC ...	VFP ...	Ribo-seq	GTC	moderate	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
4224	114	GTG ...	VNP ...	Ribo-seq	GTG	weak	32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
407674	123	ACC ...	TSP ...	Ribo-seq	ACC	weak	6	sORFs_org_Human	Intronic sORF	BJ, HCT116, HEK293, HeLa, Jurkat, THP-1

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