Transcript 95996 | MetamORF

Transcript

ID CARD

MetamORF ID

95996

ENST00000485093

Name

TM9SF3-205

Strand

Biotype

processed_transcript

Start-end positions

96522277-96528173

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTC ...

Genome browsers

UCSC

Gene

HGNC:21529

Aliases

ENSG00000077147,
HGNC:21529, NCBI:56889, OFF:TM9SF3,
SMBP, TM9SF3

Chr 10

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2952193	114	ATG ...	MDK ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	hES
96002	84	CTG ...	LVI ...	Ribo-seq	CTG		29	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
897736	75	TTT ...	FLS ...	Ribo-seq	TTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
404892	84	TAT ...	YGL ...	Ribo-seq	TAT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
276995	39	TTG ...	LDI ...	Ribo-seq	TTG	strong	6	sORFs_org_Human	ncRNA sORF	BJ, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
897738	63	ACT ...	TVC ...	Ribo-seq	ACT		1	sORFs_org_Human	ncRNA sORF	Jurkat
897745	36	GGG ...	GHI ...	Ribo-seq	GGG	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
96006	90	CTG ...	LVL ...	Ribo-seq	CTG		29	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
95995	54	GTG ...	VTI ...	Ribo-seq	GTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
98064	45	GTG ...	VCT ...	Ribo-seq	GTG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
897741	117	ATC ...	IYY ...	Ribo-seq	ATC		1	sORFs_org_Human	ncRNA sORF	Jurkat
95998	66	GTG ...	VTV ...	Ribo-seq	GTG		29	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
96004	87	GTG ...	VLV ...	Ribo-seq	GTG		29	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
897751	147	TTC ...	FIF ...	Ribo-seq	TTC		1	sORFs_org_Human	ncRNA sORF	Jurkat
897749	138	ACG ...	TSF ...	Ribo-seq	ACG		1	sORFs_org_Human	ncRNA sORF	Jurkat
404890	42	GCC ...	AFV ...	Ribo-seq	GCC		2	sORFs_org_Human	ncRNA sORF	HCT116, HEK293
404894	69	ATT ...	IVT ...	Ribo-seq	ATT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
897743	123	TAT ...	YKI ...	Ribo-seq	TAT		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
1500369	66	ATG ...	MAY ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	ncRNA sORF	BJ, Blood, HeLa, MDA-MB-231
3199515	48	ACA ...	TSA ...	Ribo-seq	ACA		1	sORFs_org_Human	ncRNA sORF	HEK293
96000	75	CTG ...	LCI ...	Ribo-seq	CTG		29	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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