Transcript 361 | MetamORF

Transcript

ID CARD

MetamORF ID

361

ENST00000369086

Name

TIAL1-201

Strand

Biotype

protein_coding

Start-end positions

119581733-119588210

CDS Start-stop positions

119581918-119588163

CDS Relative positions

Sequences

Transcript sequence

TTA ...

Genome browsers

UCSC

Gene

HGNC:11804

Aliases

ENSG00000151923,
HGNC:11804, NCBI:7073, OFF:TIAL1,
TIAL1, TIAR

Chr 10

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
98846	42	TTG ...	LWN ...	Ribo-seq	TTG	moderate	9	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
899460	66	TGC ...	CSC ...	Ribo-seq	TGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
899462	72	CAG ...	QRC ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
842	252	TTG ...	LQH ...	Ribo-seq	TTG		24	sORFs_org_Human	CDS sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
899454	30	TAT ...	YQI ...	Ribo-seq	TAT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
360	57	ATG ...	MTH ...	Ribo-seq	ATG	moderate	11	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
98844	30	ATG ...	MNT ...	Ribo-seq	ATG	weak	10	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
899458	60	TGC ...	CCI ...	Ribo-seq	TGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
899456	63	TGG ...	WGF ...	Ribo-seq	TGG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3304237	258	ATG ...	MIT ...	Predicted	ATG		1	Mackowiak2015	CDS sORF

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