Transcript 1154 | MetamORF

Transcript

ID CARD

MetamORF ID

1154

ENST00000373895

Name

TFAM-201

Strand

Biotype

protein_coding

Start-end positions

58385434-58395288

CDS Start-stop positions

58385548-58395074

CDS Relative positions

Sequences

Transcript sequence

TGA ...

Genome browsers

UCSC

Gene

HGNC:11741

Aliases

ENSG00000108064,
HGNC:11741, NCBI:7019, OFF:TFAM,
TCF6, TCF6L2, TFAM

Chr 10

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
480352	105	TTG ...	LLE ...	Ribo-seq	TTG	weak	22	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1156	129	GTG ...	VPW ...	Ribo-seq	GTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
404331	243	CAT ...	HVG ...	Ribo-seq	CAT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
406034	168	CAT ...	HVG ...	Ribo-seq	CAT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
895172	66	GGG ...	GVG ...	Ribo-seq	GGG	strong	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
404329	252	TCT ...	SPK ...	Ribo-seq	TCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
406032	177	TCT ...	SPK ...	Ribo-seq	TCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
1158	114	CTG ...	LEQ ...	Ribo-seq	CTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
4544433	33	GGG ...	GKV ...	Ribo-seq MS	GGG	weak	1	Laumont2016	Alternative InCDS Overlapping sORF	B_cell
1153	165	GTG ...	VGR ...	Ribo-seq	GTG		28	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
94956	54	CTG ...	LPH ...	Ribo-seq	CTG	weak	20	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
94954	96	TTG ...	LCI ...	Ribo-seq	TTG	moderate	23	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3199322	36	CTA ...	LKR ...	Ribo-seq	CTA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
522966	39	ATG ...	MLK ...	Ribo-seq	ATG	moderate	12	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
97014	39	TTG ...	LKL ...	Ribo-seq	TTG	weak	6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
895174	288	TCG ...	SGH ...	Ribo-seq	TCG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
480354	102	CTG ...	LEL ...	Ribo-seq	CTG	moderate	22	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
97016	33	TTG ...	LDE ...	Ribo-seq	TTG	strong	9	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, hES, LCL, MDA-MB-231, U2OS
1309689	261	GAT ...	DGV ...	Ribo-seq	GAT		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293
522963	42	ATG ...	MLI ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1046127	294	TTG ...	LGS ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	guo_2014, HEK293

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