Transcript 287286

Transcript

ID CARD

MetamORF ID

287286

ENST00000533685

Name

SYVN1-215

Strand

Biotype

retained_intron

Start-end positions

65132695-65133320

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGC ...

Genome browsers

UCSC

Gene

HGNC:20738

Aliases

DER3,
ENSG00000162298, HGNC:20738, HRD1,
NCBI:84447, OFF:SYVN1, SYVN1

Chr 11

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
287296	195	ATG ...	MFG ...	Ribo-seq	ATG		2	sORFs_org_Human	Intronic sORF	LCL, MM1S
287288	75	TTG ...	LLH ...	Ribo-seq	TTG		3	sORFs_org_Human	Intronic sORF	Blood, LCL, RPE-1
938152	192	CTG ...	LAF ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	Brain
1726513	30	TTG ...	LSG ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	Intronic sORF	Blood, HeLa, MDA-MB-231, MM1S, RPE-1
529690	75	GTG ...	VMG ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	Intronic sORF	BJ, guo_2014, HeLa, hES, U2OS
1008519	63	GTG ...	VFF ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	Intronic sORF	guo_2014, HeLa, hES
529694	117	CTG ...	LYI ...	Ribo-seq	CTG	moderate	12	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HeLa, hES, HFF, MM1S, RPE-1, THP-1, U2OS
287294	168	CTG ...	LAP ...	Ribo-seq	CTG		4	sORFs_org_Human	Intronic sORF	Blood, HeLa, LCL, MM1S
909400	45	CCC ...	PNI ...	Ribo-seq	CCC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
287290	93	ATG ...	MTS ...	Ribo-seq	ATG		3	sORFs_org_Human	Intronic sORF	Blood, LCL, RPE-1
909402	114	TGG ...	WPS ...	Ribo-seq	TGG		1	sORFs_org_Human	Intronic sORF	Jurkat
287298	219	GTG ...	VRA ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	LCL
909406	63	TCT ...	SGT ...	Ribo-seq	TCT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
938157	30	TTG ...	LSL ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	Intronic sORF	Brain, HEK293T, MM1S, RPE-1
529687	30	CTG ...	LAL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Intronic sORF	Blood, RPE-1, THP-1, U2OS
529692	84	CTG ...	LGK ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Intronic sORF	BJ, guo_2014, HeLa, hES, MM1S, RPE-1, U2OS
938154	228	CTG ...	LER ...	Ribo-seq	CTG		6	sORFs_org_Human	Intronic sORF	BJ, Brain, HeLa, hES, MM1S, RPE-1
287285	72	TTG ...	LHS ...	Ribo-seq	TTG		4	sORFs_org_Human	Intronic sORF	BJ, Blood, LCL, RPE-1
287292	51	CTG ...	LVR ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
287300	237	ATG ...	MSA ...	Ribo-seq	ATG		1	sORFs_org_Human	Intronic sORF	LCL
909404	57	ACG ...	TFL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat

Export data