Transcript 295899

Transcript

ID CARD

MetamORF ID

295899

ENST00000318950

Name

SWAP70-201

Strand

Biotype

protein_coding

Start-end positions

9664077-9752991

CDS Start-stop positions

9664180-9749970

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

HGNC:17070

Aliases

ENSG00000133789,
HGNC:17070, KIAA0640, NCBI:23075,
OFF:SWAP70, SWAP-70, SWAP70

Chr 11

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1819317	54	ATG ...	MSA ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
295905	69	ATG ...	MKR ...	Ribo-seq	ATG		8	sORFs_org_Human	InCDS Overlapping sORF	BJ, hES, LCL, MDA-MB-231, RPE-1, U2OS
917221	96	TCT ...	SGT ...	Ribo-seq	TCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1819315	63	GTG ...	VDW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
295898	180	GTG ...	VQQ ...	Ribo-seq	GTG		5	sORFs_org_Human	InCDS Overlapping sORF	BJ, hES, LCL, MDA-MB-231, RPE-1
1819311	93	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
295901	96	TTG ...	LKM ...	Ribo-seq	TTG		7	sORFs_org_Human	InCDS Overlapping sORF	BJ, hES, LCL, MDA-MB-231, RPE-1
409832	81	AGG ...	RPG ...	Ribo-seq	AGG		1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
1819319	30	GTG ...	VFP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
295903	90	ATG ...	MRD ...	Ribo-seq	ATG		6	sORFs_org_Human	InCDS Overlapping sORF	BJ, hES, LCL, MDA-MB-231, RPE-1
917219	111	AGC ...	SCS ...	Ribo-seq	AGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1819313	87	CTG ...	LGT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa

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