Transcript 4593 | MetamORF

Transcript

ID CARD

MetamORF ID

4593

ENST00000491231

Name

STX5-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

62806937-62832042

CDS Start-stop positions

62824503-62831243

CDS Relative positions

Sequences

Transcript sequence

TCG ...

Genome browsers

UCSC

Gene

HGNC:11440

Aliases

ENSG00000162236,
HGNC:11440, NCBI:6811, OFF:STX5,
SED5, STX5, STX5A

Chr 11

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1726052	102	CTG ...	LSP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, MDA-MB-231
1989145	30	TTG ...	LSP ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa, hES
4592	132	CTG ...	LDV ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	Downstream NMD sORF	Blood, Brain, HEK293, HeLa, hES, HFF, Jurkat, MDA-MB-231, RPE-1, THP-1
4597	45	TTG ...	LAH ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative Downstream NMD sORF	HAP1, HEK293
908607	126	GTT ...	VEA ...	Ribo-seq	GTT	strong	1	sORFs_org_Human	Downstream NMD sORF	Jurkat
286765	36	TTG ...	LWS ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream NMD sORF	LCL
4595	147	GTG ...	VLG ...	Ribo-seq	GTG	moderate	12	sORFs_org_Human	Downstream NMD sORF	Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
286769	141	TTG ...	LRP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, LCL, MDA-MB-231
286767	54	TTG ...	LSS ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Alternative Downstream NMD sORF	hES, LCL
102487	93	CTG ...	LAS ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS NMD Overlapping sORF	HEK293
1047822	66	TTG ...	LGS ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative Downstream NMD sORF	HAP1, HEK293

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