Transcript 102491

Transcript

ID CARD

MetamORF ID

102491

ENST00000486437

Name

STX5-205

Strand

Biotype

nonsense_mediated_decay

Start-end positions

62827577-62832051

CDS Start-stop positions

62830509-62831243

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

HGNC:11440

Aliases

ENSG00000162236,
HGNC:11440, NCBI:6811, OFF:STX5,
SED5, STX5, STX5A

Chr 11

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
102496	96	TTG ...	LGK ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	HEK293, HeLa, RPE-1
908623	168	CCT ...	PGR ...	Ribo-seq	CCT		1	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	Jurkat
102490	39	ATG ...	MRL ...	Ribo-seq	ATG	moderate	21	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
908616	87	CGG ...	RDR ...	Ribo-seq	CGG		1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
3314983	237	ATG ...	MIP ...	Predicted	ATG		1	Mackowiak2015	CDS NMD sORF
2316219	54	CTG ...	LGN ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	MDA-MB-231
908620	93	GTG ...	VST ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
102494	72	ATG ...	MTL ...	Ribo-seq	ATG		14	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	HAP1, HEK293, HeLa, hES, HFF, MM1S, RPE-1, THP-1
286771	33	CTG ...	LPA ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231
1317279	111	GTG ...	VGR ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	HEK293, HeLa
908614	51	TCG ...	SLQ ...	Ribo-seq	TCG		1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
1317283	123	TTG ...	LLI ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	HEK293
407821	30	AAT ...	NDP ...	Ribo-seq	AAT	moderate	7	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	BJ, HCT116, HEK293, HeLa, Jurkat, THP-1
1317281	120	TTG ...	LIG ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	HEK293

Export data