Transcript 170701

Transcript

ID CARD

MetamORF ID

170701

ENST00000291386

Name

SSU72-201

Strand

Biotype

protein_coding

Start-end positions

1541673-1574869

CDS Start-stop positions

1542066-1574557

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

HGNC:25016

Aliases

ENSG00000160075,
HGNC:25016, HSPC182, NCBI:29101,
OFF:SSU72, SSU72

Chr 1

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
915578	219	GGG ...	GWE ...	Ribo-seq	GGG		1	sORFs_org_Human	Overlapping sORF Upstream	Jurkat
3407860	585	ATG ...	MPS ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
915623	237	CGC ...	RGS ...	Ribo-seq	CGC		1	sORFs_org_Human	Overlapping sORF Upstream	Jurkat
170705	159	ATG ...	MIS ...	Ribo-seq	ATG		20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
170700	126	ATG ...	MIF ...	Ribo-seq	ATG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
1826585	159	ATG ...	MSR ...	Ribo-seq	ATG	weak	1	Johnstone2016	Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
411316	213	GAA ...	EPK ...	Ribo-seq	GAA		2	sORFs_org_Human	Overlapping sORF Upstream	HCT116, Jurkat
223321	165	ATG ...	MFM ...	Ribo-seq	ATG		20	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
856634	111	AAG ...	KTK ...	Ribo-seq	AAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
170703	141	ATG ...	MTR ...	Ribo-seq	ATG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
442187	45	TCA ...	SLA ...	Ribo-seq	TCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
915668	243	TGT ...	CSR ...	Ribo-seq	TGT		1	sORFs_org_Human	Overlapping sORF Upstream	Jurkat

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