Transcript 1832 | MetamORF

Transcript

ID CARD

MetamORF ID

1832

ENST00000437681

Name

SNHG3-202

Strand

Biotype

retained_intron

Start-end positions

28506351-28509633

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

HGNC:10118

Aliases

ENSG00000242125,
HGNC:10118, NCBI:8420, NCRNA00014,
OFF:SNHG3, RNU17C, RNU17D,
SNHG3, U17HG, U17HG-A

Chr 1

ORFs

51 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
899912	78	TGC ...	CCF ...	Ribo-seq	TGC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
899949	84	ATT ...	ILS ...	Ribo-seq	ATT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
100651	90	TTG ...	LQK ...	Ribo-seq	TTG	moderate	10	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
899821	123	GAT ...	DLL ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	Jurkat
1315302	69	TTG ...	LEQ ...	Ribo-seq	TTG	strong	4	sORFs_org_Human	Intronic sORF	HEK293, HeLa, RPE-1
1822001	36	GTG ...	VQS ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	HeLa
1007026	42	GTG ...	VNC ...	Ribo-seq	GTG		2	sORFs_org_Human	Intronic sORF	guo_2014, HeLa
899947	33	AAT ...	NAH ...	Ribo-seq	AAT	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
1007013	120	TTG ...	LLR ...	Ribo-seq	TTG		4	sORFs_org_Human	Intronic sORF	guo_2014, HeLa, RPE-1
1007011	129	TTG ...	LQD ...	Ribo-seq	TTG		4	sORFs_org_Human	Intronic sORF	guo_2014, HeLa, RPE-1
1007021	51	TTG ...	LSM ...	Ribo-seq	TTG		4	sORFs_org_Human	Intronic sORF	guo_2014, HeLa, RPE-1
899875	54	GAG ...	EVH ...	Ribo-seq	GAG	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
1315311	159	GTG ...	VQW ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Intronic sORF	HEK293, HeLa
1007023	45	ATG ...	MIS ...	Ribo-seq	ATG		4	sORFs_org_Human	Intronic sORF	guo_2014, HeLa, RPE-1
1989869	51	ATG ...	MET ...	Ribo-seq	ATG	strong	1	sORFs_org_Human	Intronic sORF	HeLa
899881	39	CCT ...	PPF ...	Ribo-seq	CCT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
899976	132	GTG ...	VLV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
406603	108	ACA ...	TFN ...	Ribo-seq	ACA	weak	1	sORFs_org_Human	Intronic sORF	HCT116
1007019	66	TTG ...	LLI ...	Ribo-seq	TTG		3	sORFs_org_Human	Intronic sORF	guo_2014, HeLa, RPE-1
100627	111	TTG ...	LTF ...	Ribo-seq	TTG	moderate	20	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, Jurkat, MDA-MB-231, RPE-1, U2OS
1315309	42	ATG ...	MPP ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Intronic sORF	HEK293
100624	117	TTG ...	LAL ...	Ribo-seq	TTG	strong	19	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1, U2OS
100642	78	TTG ...	LAD ...	Ribo-seq	TTG	moderate	9	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, RPE-1
100644	51	GTG ...	VHF ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Intronic sORF	HEK293
100649	57	CTG ...	LFC ...	Ribo-seq	CTG	moderate	14	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1, U2OS
406605	126	AAT ...	NLW ...	Ribo-seq	AAT	moderate	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
284444	33	ATG ...	MEI ...	Ribo-seq	ATG		5	sORFs_org_Human	Intronic sORF	guo_2014, HeLa, LCL, RPE-1
1007015	93	TTG ...	LVS ...	Ribo-seq	TTG		2	sORFs_org_Human	Intronic sORF	guo_2014, HeLa
899958	141	AGG ...	RHT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
899893	144	CTT ...	LGC ...	Ribo-seq	CTT	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
100636	63	CTG ...	LIF ...	Ribo-seq	CTG	moderate	24	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
406617	105	AAA ...	KRL ...	Ribo-seq	AAA	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
1007028	42	CTG ...	LRK ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	guo_2014
100664	51	CTG ...	LLG ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, MDA-MB-231, RPE-1
1315316	78	TTG ...	LAA ...	Ribo-seq	TTG	strong	3	sORFs_org_Human	Intronic sORF	HEK293, HeLa, MDA-MB-231
1007017	90	GTG ...	VSK ...	Ribo-seq	GTG		2	sORFs_org_Human	Intronic sORF	guo_2014, HeLa
899856	126	CTT ...	LRI ...	Ribo-seq	CTT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
100662	57	GTG ...	VTL ...	Ribo-seq	GTG	moderate	8	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, MDA-MB-231, RPE-1
100689	90	CTG ...	LPG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Intronic sORF	Blood, HEK293, MDA-MB-231
899827	78	GCT ...	ANC ...	Ribo-seq	GCT		1	sORFs_org_Human	Intronic sORF	Jurkat
899937	51	ATT ...	IWH ...	Ribo-seq	ATT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
406601	135	CGA ...	RSA ...	Ribo-seq	CGA	moderate	3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
1822143	39	GTG ...	VSH ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Intronic sORF	HeLa, MDA-MB-231
284434	33	TTG ...	LLS ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Intronic sORF	LCL
100691	72	ATG ...	MIS ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	Intronic sORF	Blood, HEK293, MDA-MB-231
899816	39	ATA ...	ISC ...	Ribo-seq	ATA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
1315328	42	ATG ...	MRF ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Intronic sORF	HEK293, HeLa
1831	90	ATG ...	MHI ...	Ribo-seq	ATG	moderate	17	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, U2OS
406609	117	CAG ...	QTW ...	Ribo-seq	CAG	weak	1	sORFs_org_Human	Intronic sORF	HCT116
899924	69	TGT ...	CTK ...	Ribo-seq	TGT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
100638	36	TTG ...	LTI ...	Ribo-seq	TTG	moderate	22	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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