Transcript 226 | MetamORF

Transcript

ID CARD

MetamORF ID

226

ENST00000361804

Name

SMC3-201

Strand

Biotype

protein_coding

Start-end positions

110567691-110604636

CDS Start-stop positions

110567817-110604302

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

HGNC:2468

Aliases

BAM,
bamacan, CSPG6, ENSG00000108055,
HCAP, HGNC:2468, NCBI:9126,
OFF:SMC3, SMC3, SMC3L1

Chr 10

ORFs

66 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
278306	30	ATG ...	MMR ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, LCL, MDA-MB-231
2539942	42	CTG ...	LLS ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES
2092178	36	TTG ...	LLI ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, MDA-MB-231
1983668	30	GTG ...	VTK ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HeLa, hES
278291	42	CTG ...	LKQ ...	Ribo-seq	CTG		10	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, hES, LCL, MDA-MB-231
900535	30	TCC ...	SRT ...	Ribo-seq	TCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1720425	48	ATG ...	MSG ...	Ribo-seq	ATG		6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231
774	183	ATG ...	MSL ...	Ribo-seq	ATG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1
1203444	60	ATG ...	MLS ...	Ribo-seq	ATG		6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HAP1, HEK293, HeLa, HFF, MDA-MB-231
1501130	30	ATG ...	MLW ...	Ribo-seq	ATG	weak	3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
405807	81	AGG ...	RNL ...	Ribo-seq	AGG		1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
230	54	GTG ...	VLS ...	Ribo-seq	GTG		6	sORFs_org_Human	InCDS Overlapping sORF	HEK293, hES, LCL
279695	45	ATG ...	MMR ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, hES, HFF, LCL
278287	72	TTG ...	LLL ...	Ribo-seq	TTG		10	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, hES, LCL, MDA-MB-231
1129274	36	ATG ...	MSG ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1
632279	48	ATG ...	MRG ...	Ribo-seq	ATG		5	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, THP-1
1129566	51	TTG ...	LKR ...	Ribo-seq	TTG		5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, MDA-MB-231
1093136	33	TTG ...	LIQ ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, MDA-MB-231
279687	126	ATG ...	MTR ...	Ribo-seq	ATG		7	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231
3199712	45	AAA ...	KRH ...	Ribo-seq	AAA		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
279691	105	CTG ...	LLY ...	Ribo-seq	CTG		8	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231
3199710	75	CAC ...	HLL ...	Ribo-seq	CAC		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
480869	30	ATG ...	MFK ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HEK293T, HeLa, HFF, MDA-MB-231
1203448	69	CTG ...	LLK ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	HAP1, MDA-MB-231
278297	105	TTG ...	LER ...	Ribo-seq	TTG		6	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, hES, LCL, MDA-MB-231
279693	78	CTG ...	LKQ ...	Ribo-seq	CTG		5	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231
480873	51	GTG ...	VNQ ...	Ribo-seq	GTG		5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, MDA-MB-231
278295	111	ATG ...	MCL ...	Ribo-seq	ATG		6	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, hES, LCL, MDA-MB-231
900537	132	GTA ...	VLV ...	Ribo-seq	GTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1501823	123	TTG ...	LLD ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HFF, MDA-MB-231, RPE-1
405272	39	AGG ...	RNL ...	Ribo-seq	AGG		1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
770	195	TTG ...	LFS ...	Ribo-seq	TTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1
480871	57	TTG ...	LNV ...	Ribo-seq	TTG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, MDA-MB-231
225	36	ATG ...	MLS ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
898963	69	AGA ...	RPL ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1203446	72	TTG ...	LLL ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	HAP1, HEK293, MDA-MB-231
228	36	CTG ...	LER ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1129564	90	ATG ...	MQN ...	Ribo-seq	ATG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
278302	63	ATG ...	MTQ ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
481108	129	CTG ...	LVL ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, HFF, MDA-MB-231, RPE-1, THP-1
278279	75	GTG ...	VLK ...	Ribo-seq	GTG	weak	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231
278281	72	CTG ...	LKD ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
1129277	51	CTG ...	LFS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
278310	72	CTG ...	LEL ...	Ribo-seq	CTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
99465	120	GTG ...	VLF ...	Ribo-seq	GTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, HFF, MDA-MB-231, RPE-1, THP-1
279689	108	TTG ...	LLL ...	Ribo-seq	TTG		7	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231
1720422	102	TTG ...	LNV ...	Ribo-seq	TTG		6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
278304	42	TTG ...	LNC ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa, LCL
278283	81	ATG ...	MQS ...	Ribo-seq	ATG	weak	6	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	BJ, Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
278293	129	TTG ...	LTK ...	Ribo-seq	TTG		5	sORFs_org_Human	InCDS Overlapping sORF	HEK293, hES, LCL, MDA-MB-231
278300	75	CTG ...	LGV ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa, hES, LCL, MDA-MB-231, RPE-1
278314	51	GTG ...	VYE ...	Ribo-seq	GTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
2305569	87	CTG ...	LVF ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
631676	45	TTG ...	LDH ...	Ribo-seq	TTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, THP-1
278289	69	CTG ...	LLY ...	Ribo-seq	CTG		11	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, hES, LCL, MDA-MB-231
223	33	ATG ...	MTN ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
776	90	TTG ...	LII ...	Ribo-seq	TTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1
99469	105	TTG ...	LWR ...	Ribo-seq	TTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, guo_2014, HEK293, HEK293T, HeLa, HFF, MDA-MB-231, RPE-1, THP-1
278285	90	ATG ...	MTR ...	Ribo-seq	ATG		10	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
278312	45	CTG ...	LEK ...	Ribo-seq	CTG	strong	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231
2305567	96	TTG ...	LKA ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
278308	87	TTG ...	LIK ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
481115	96	GTG ...	VNQ ...	Ribo-seq	GTG		6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231
631673	42	GTG ...	VER ...	Ribo-seq	GTG	moderate	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, guo_2014, HEK293, hES, MDA-MB-231, RPE-1, THP-1
772	186	GTG ...	VMS ...	Ribo-seq	GTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1
99467	111	CTG ...	LLL ...	Ribo-seq	CTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, guo_2014, HEK293, HEK293T, HeLa, HFF, MDA-MB-231, RPE-1, THP-1

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