Transcript 98590 | MetamORF

Transcript

ID CARD

MetamORF ID

98590

ENST00000474260

Name

SLK-203

Strand

Biotype

processed_transcript

Start-end positions

104008198-104019116

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

HGNC:11088

Aliases

ENSG00000065613,
HGNC:11088, KIAA0204, NCBI:9748,
OFF:SLK, se20-9, SLK,
STK2

Chr 10

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2302808	99	CTG ...	LFL ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HEK293, MDA-MB-231
2302812	87	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
2302810	90	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
98596	111	CTG ...	LLK ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293
2302814	60	TTG ...	LGA ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
405238	108	CAG ...	QQQ ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	HCT116
99420	252	CTG ...	LKK ...	Ribo-seq	CTG		13	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
405782	237	CAG ...	QQQ ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	HCT116
3199560	114	CGC ...	RLR ...	Ribo-seq	CGC		1	sORFs_org_Human	ncRNA sORF	HEK293
524783	66	TTG ...	LSK ...	Ribo-seq	TTG		5	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, U2OS
2952784	99	GTG ...	VEK ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	hES
3199562	33	TCA ...	SVF ...	Ribo-seq	TCA	strong	1	sORFs_org_Human	ncRNA sORF	HEK293
2092122	63	ATG ...	MKP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	ncRNA sORF	HEK293, MDA-MB-231
98589	135	CTG ...	LEQ ...	Ribo-seq	CTG		17	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
98594	123	CTG ...	LKK ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293
1129241	45	CTG ...	LKN ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	HEK293, hES
3199558	171	AAT ...	NLE ...	Ribo-seq	AAT		1	sORFs_org_Human	ncRNA sORF	HEK293
99422	195	CTG ...	LNN ...	Ribo-seq	CTG		10	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HEK293, hES, HFF, MDA-MB-231
98592	111	TTG ...	LRD ...	Ribo-seq	TTG		12	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, U2OS

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