Transcript 4837 | MetamORF

Transcript

ID CARD

MetamORF ID

4837

ENST00000486960

Name

SF1-217

Strand

Biotype

retained_intron

Start-end positions

64769278-64770639

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAA ...

Genome browsers

UCSC

Gene

HGNC:12950

Aliases

ENSG00000168066,
HGNC:12950, NCBI:7536, OFF:SF1,
SF1, ZCCHC25, ZFM1,
ZNF162

Chr 11

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
408011	123	GAT ...	DGQ ...	Ribo-seq	GAT		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
4841	105	TTG ...	LGA ...	Ribo-seq	TTG		22	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
1596751	72	CTG ...	LSI ...	Ribo-seq	CTG		8	sORFs_org_Human	Intronic sORF	BJ, Flp-In_T-REx-293, HEK293, HeLa, loayza_puch_2016, MM1S
408013	144	GAA ...	EGK ...	Ribo-seq	GAA		1	sORFs_org_Human	Intronic sORF	HCT116
909114	54	GAT ...	DAA ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	Jurkat
909116	39	CCT ...	PEA ...	Ribo-seq	CCT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
4836	111	TTG ...	LPG ...	Ribo-seq	TTG		19	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MM1S, THP-1, U2OS
909120	84	TGT ...	CCQ ...	Ribo-seq	TGT		2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
4845	207	CTG ...	LKN ...	Ribo-seq	CTG		30	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1008481	81	CTG ...	LVT ...	Ribo-seq	CTG		3	sORFs_org_Human	Intronic sORF	guo_2014, HEK293
4843	150	GTG ...	VKE ...	Ribo-seq	GTG		28	sORFs_org_Human	Intronic sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
287130	45	CTG ...	LPI ...	Ribo-seq	CTG		16	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1
482561	57	ATG ...	MPW ...	Ribo-seq	ATG		15	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, RPE-1
482563	69	ATG ...	MSH ...	Ribo-seq	ATG		17	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
909118	78	CAG ...	QEK ...	Ribo-seq	CAG		1	sORFs_org_Human	Intronic sORF	Jurkat
287134	93	GTG ...	VQC ...	Ribo-seq	GTG	moderate	15	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4839	93	ATG ...	MAR ...	Ribo-seq	ATG		21	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS

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