Transcript 4827 | MetamORF

Transcript

ID CARD

MetamORF ID

4827

ENST00000486867

Name

SF1-216

Strand

Biotype

protein_coding

Start-end positions

64766021-64769071

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACC ...

Genome browsers

UCSC

Gene

HGNC:12950

Aliases

ENSG00000168066,
HGNC:12950, NCBI:7536, OFF:SF1,
SF1, ZCCHC25, ZFM1,
ZNF162

Chr 11

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
635508	90	CTG ...	LWA ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	HEK293, MDA-MB-231, THP-1
2055524	72	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HEK293, MDA-MB-231
4829	180	GTG ...	VIL ...	Ribo-seq	GTG		13	sORFs_org_Human	sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
3201217	63	AGT ...	STW ...	Ribo-seq	AGT		1	sORFs_org_Human	sORF	HEK293
635499	51	GTG ...	VGP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	sORF	MDA-MB-231, THP-1
2316677	60	GTG ...	VVL ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	sORF	MDA-MB-231
635504	69	CTG ...	LPP ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	HEK293, MDA-MB-231, THP-1
635512	111	GTG ...	VKH ...	Ribo-seq	GTG		3	sORFs_org_Human	sORF	HEK293, MDA-MB-231, THP-1
635510	102	CTG ...	LSQ ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	MDA-MB-231, THP-1
1317451	36	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HEK293
2055522	69	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HEK293, MDA-MB-231
2328312	138	CTG ...	LSQ ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	MDA-MB-231
916531	66	ATC ...	IST ...	Ribo-seq	ATC		1	sORFs_org_Human	sORF	Jurkat
2316679	66	ATG ...	MEV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	sORF	MDA-MB-231
4831	183	CTG ...	LVI ...	Ribo-seq	CTG		14	sORFs_org_Human	sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
635501	54	CTG ...	LVG ...	Ribo-seq	CTG	strong	2	sORFs_org_Human	sORF	MDA-MB-231, THP-1
1317449	33	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HEK293
1825484	147	GTG ...	VKH ...	Ribo-seq	GTG		2	sORFs_org_Human	sORF	HeLa, MDA-MB-231
287121	120	CTG ...	LNW ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF	HEK293, LCL, MDA-MB-231, THP-1
635506	75	CTG ...	LGL ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	HEK293, MDA-MB-231, THP-1
294654	219	CTG ...	LVI ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	HeLa, LCL, MDA-MB-231
2055526	105	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HEK293, MDA-MB-231
635497	39	GTG ...	VAP ...	Ribo-seq	GTG	strong	2	sORFs_org_Human	sORF	MDA-MB-231, THP-1
635495	45	ATG ...	MDP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	sORF	THP-1
4826	246	CTG ...	LDE ...	Ribo-seq	CTG		19	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
483834	87	CTG ...	LLF ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF	HEK293T, HeLa, hES, MM1S
1825486	156	CTG ...	LNW ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HeLa, MDA-MB-231
2316681	102	CTG ...	LAL ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	sORF	MDA-MB-231
2328310	126	CTG ...	LWA ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	MDA-MB-231
2328308	111	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	MDA-MB-231
294652	216	GTG ...	VIL ...	Ribo-seq	GTG		3	sORFs_org_Human	sORF	HeLa, LCL, MDA-MB-231

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