Transcript 1588 | MetamORF

Transcript

ID CARD

MetamORF ID

1588

ENST00000253063

Name

SESN2-201

Strand

Biotype

protein_coding

Start-end positions

28259527-28282491

CDS Start-stop positions

28259848-28280802

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

HGNC:20746

Aliases

DKFZp761M0212,
ENSG00000130766, HGNC:20746, HI95,
NCBI:83667, OFF:SESN2, SES2,
SESN2, SEST2

Chr 1

ORFs

46 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1702291	132	CTG ...	LVV ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
1728232	300	CTG ...	LGP ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	Alternative Overlapping sORF Upstream	Blood, HEK293, MM1S
1205541	57	CTG ...	LRS ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	sORF Upstream	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1
87080	87	ATG ...	MRT ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, HFF
1702302	171	CTG ...	LRV ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
284042	63	CTG ...	LPP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
284045	30	TTG ...	LSL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, LCL, MM1S
87082	39	TTG ...	LAS ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, RPE-1
1296232	96	CTG ...	LAP ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293T
284053	33	TTG ...	LSW ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, U2OS
1702308	96	GTG ...	VVW ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
1482256	153	CTG ...	LTS ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood
87068	129	CTG ...	LTT ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, MDA-MB-231
283993	39	CTG ...	LRA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL
1728236	138	CTG ...	LRC ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	sORF Upstream	Blood
1702304	165	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
1205538	60	ATG ...	MLR ...	Ribo-seq	ATG	moderate	14	sORFs_org_Human Johnstone2016	sORF Upstream	BJ, Blood, Brain_tumor, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1
1702297	120	CTG ...	LSG ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
1315067	192	CTG ...	LGE ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HEK293, MM1S
1702289	78	ATG ...	MVP ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1702306	150	ATG ...	MRS ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF
1728352	93	TTG ...	LVP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293
899427	69	ACT ...	TTC ...	Ribo-seq	ACT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
284004	54	GTG ...	VFL ...	Ribo-seq	GTG	weak	6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293T, HeLa, LCL, MDA-MB-231, U2OS
1633	81	TTG ...	LWK ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, U2OS
1728356	99	GTG ...	VAS ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
1728234	282	CTG ...	LAP ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	Alternative Overlapping sORF Upstream	Blood, HEK293, MM1S
530000	69	ATG ...	MRG ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, HFF, U2OS
1622	36	GTG ...	VNR ...	Ribo-seq	GTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL
2319592	33	CTG ...	LPP ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1728358	87	CTG ...	LRG ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
1702293	129	GTG ...	VVT ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
1728354	48	CTG ...	LPL ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa
1702295	126	GTG ...	VTL ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
1644	57	ATG ...	MRT ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293
1663	45	CTG ...	LGR ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MM1S
87078	111	TTG ...	LWK ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, MM1S
1508117	141	CTG ...	LEP ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, MM1S
1126778	93	GTG ...	VWT ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293
284058	33	GTG ...	VLC ...	Ribo-seq	GTG	moderate	8	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, LCL, MDA-MB-231, MM1S, THP-1, U2OS
1587	99	CTG ...	LTT ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, MDA-MB-231
1728385	123	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
1728349	135	GTG ...	VAA ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MM1S
1702311	39	CTG ...	LEL ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MM1S
1593	48	ATG ...	MVP ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, MDA-MB-231
284040	72	ATG ...	MAA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL

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