Transcript 426 | MetamORF

Transcript

ID CARD

MetamORF ID

426

ENST00000369075

Name

SEC23IP-201

Strand

Biotype

protein_coding

Start-end positions

119892711-119944658

CDS Start-stop positions

119892783-119933767

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

HGNC:17018

Aliases

ENSG00000107651,
HGNC:17018, NCBI:11196, OFF:SEC23IP,
p125, SEC23IP

Chr 10

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
899632	39	AGT ...	SRM ...	Ribo-seq	AGT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1719982	33	CTG ...	LDL ...	Ribo-seq	CTG	strong	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, RPE-1
2303920	42	ATG ...	MSR ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
425	54	ATG ...	MSQ ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
279841	75	CTG ...	LNI ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
279849	93	ATG ...	MNT ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, LCL, MDA-MB-231
279835	93	GTG ...	VGT ...	Ribo-seq	GTG		4	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231, RPE-1
278761	117	CTG ...	LSD ...	Ribo-seq	CTG		6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, THP-1
900671	126	AGT ...	SSF ...	Ribo-seq	AGT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2303926	99	GTG ...	VPR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, MDA-MB-231
278767	30	TTG ...	LVL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, hES, LCL, MDA-MB-231
405575	30	AAT ...	NLL ...	Ribo-seq	AAT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
278769	30	TTG ...	LRV ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, hES, LCL, RPE-1
899630	84	GAT ...	DKP ...	Ribo-seq	GAT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
278773	75	TTG ...	LNQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL
279843	57	TTG ...	LKR ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231, RPE-1
279839	132	CTG ...	LSD ...	Ribo-seq	CTG		6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, THP-1
1501348	69	GTG ...	VWY ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HeLa, hES, MDA-MB-231, RPE-1
279845	54	ATG ...	MNL ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL
900673	99	GAT ...	DKP ...	Ribo-seq	GAT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
278763	57	CTG ...	LNI ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
279837	78	GTG ...	VWT ...	Ribo-seq	GTG		5	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231, RPE-1
1501346	72	GTG ...	VVW ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HeLa, RPE-1
279847	78	ATG ...	MRI ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	Jurkat, LCL, MDA-MB-231
278771	33	ATG ...	MNL ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
278765	39	TTG ...	LKR ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
2303922	33	ATG ...	MTL ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231

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