Transcript 4206 | MetamORF

Transcript

ID CARD

MetamORF ID

4206

ENST00000543265

Name

SDHAF2-208

Strand

Biotype

protein_coding

Start-end positions

61430144-61446115

CDS Start-stop positions

61430147-61445947

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

HGNC:26034

Aliases

C11orf79,
ENSG00000167985, FLJ20487, HGNC:26034,
NCBI:54949, OFF:SDHAF2, PGL2,
SDH5, SDHAF2

Chr 11

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4208	84	CTG ...	LRD ...	Ribo-seq	CTG	weak	21	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
4205	87	CTG ...	LLR ...	Ribo-seq	CTG	moderate	22	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HCT116, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
907975	60	GCA ...	AQP ...	Ribo-seq	GCA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
907979	129	GCT ...	AKP ...	Ribo-seq	GCT	moderate	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Jurkat
4210	45	CTG ...	LRA ...	Ribo-seq	CTG	moderate	21	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
907977	30	CCC ...	PFA ...	Ribo-seq	CCC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1725549	45	TTG ...	LLC ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231, RPE-1
1725551	33	GTG ...	VTA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1
1821255	48	TTG ...	LKS ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, hES, MDA-MB-231
3307510	267	ATG ...	MAV ...	Predicted Ribo-seq	ATG		2	Mackowiak2015 Johnstone2016	CDS sORF	Brain_tumor, HEK293, HeLa, HFF

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