Transcript 5301 | MetamORF

Transcript

ID CARD

MetamORF ID

5301

ENST00000530251

Name

SART1-206

Strand

Biotype

nonsense_mediated_decay

Start-end positions

65961729-65965447

CDS Start-stop positions

65961781-65965118

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

HGNC:10538

Aliases

Ara1,
ENSG00000175467, HAF, HGNC:10538,
NCBI:9092, OFF:SART1, SART1,
SNRNP110, Snu66

Chr 11

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
102896	78	TTG ...	LRQ ...	Ribo-seq	TTG		24	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
102898	60	CTG ...	LRE ...	Ribo-seq	CTG		21	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
482669	84	CTG ...	LMS ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, HEK293T, MDA-MB-231
909854	81	GCC ...	ALR ...	Ribo-seq	GCC		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
909848	39	GGC ...	GDA ...	Ribo-seq	GGC		1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
3308479	495	ATG ...	MGS ...	Ribo-seq	ATG		1	Johnstone2016	CDS NMD	Brain_tumor, HEK293, HeLa, HFF
909852	90	AAC ...	NPM ...	Ribo-seq	AAC		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
909844	51	AAA ...	KTS ...	Ribo-seq	AAA		1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
482671	81	ATG ...	MSS ...	Ribo-seq	ATG	weak	4	sORFs_org_Human Johnstone2016	Alternative Downstream NMD sORF	BJ, Brain_tumor, HEK293, HEK293T, HeLa, HFF, MDA-MB-231
2317535	210	GTG ...	VPP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MDA-MB-231
2317545	66	CTG ...	LRP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MDA-MB-231
2317537	156	GTG ...	VAA ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MDA-MB-231
909846	45	AGC ...	SSG ...	Ribo-seq	AGC		1	sORFs_org_Human	InCDS NMD Overlapping sORF	Jurkat
2317543	105	GTG ...	VGA ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MDA-MB-231
102900	48	CTG ...	LAA ...	Ribo-seq	CTG		21	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
2317531	294	GTG ...	VDV ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	MDA-MB-231
5300	108	GTG ...	VTA ...	Ribo-seq	GTG		25	sORFs_org_Human	Alternative Downstream NMD Overlapping sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2317533	288	GTG ...	VPL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	MDA-MB-231
408224	261	GAG ...	ERG ...	Ribo-seq	GAG		1	sORFs_org_Human	InCDS NMD Overlapping sORF	HCT116
2317541	135	GTG ...	VAN ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MDA-MB-231
909850	96	GTC ...	VIN ...	Ribo-seq	GTC		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
2317539	147	GTG ...	VAV ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	MDA-MB-231

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