Transcript 273294

Transcript

ID CARD

MetamORF ID

273294

ENST00000602389

Name

RSU1-205

Strand

Biotype

protein_coding

Start-end positions

16590620-16817454

CDS Start-stop positions

16593394-16764510

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

HGNC:10464

Aliases

ENSG00000148484,
FLJ31034, HGNC:10464, NCBI:6251,
OFF:RSU1, RSP-1, RSU1

Chr 10

ORFs

44 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
893729	189	ATA ...	IMT ...	Ribo-seq	ATA	moderate	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Jurkat
273298	57	TTG ...	LAC ...	Ribo-seq	TTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
273293	39	TTG ...	LSI ...	Ribo-seq	TTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1
893745	51	GGT ...	GDP ...	Ribo-seq	GGT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1818009	72	TTG ...	LKS ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
629691	45	TTG ...	LWL ...	Ribo-seq	TTG		11	sORFs_org_Human	sORF Upstream	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
893731	195	AGA ...	RRI ...	Ribo-seq	AGA	weak	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Jurkat
893749	78	AGG ...	RKS ...	Ribo-seq	AGG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
273296	45	ATG ...	MFL ...	Ribo-seq	ATG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
893755	45	CAC ...	HEA ...	Ribo-seq	CAC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
522349	48	CTG ...	LEC ...	Ribo-seq	CTG	moderate	16	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
404026	90	GGT ...	GVA ...	Ribo-seq	GGT		1	sORFs_org_Human	sORF Upstream	HCT116
893735	36	CAT ...	HAG ...	Ribo-seq	CAT	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
893733	210	ACC ...	TQN ...	Ribo-seq	ACC	weak	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Jurkat
893771	30	GAA ...	EEF ...	Ribo-seq	GAA	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
629695	102	CTG ...	LFS ...	Ribo-seq	CTG		11	sORFs_org_Human	sORF Upstream	BJ, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
522347	36	CTG ...	LPK ...	Ribo-seq	CTG	moderate	15	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
893773	39	CGC ...	RRT ...	Ribo-seq	CGC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
632469	51	GTG ...	VLP ...	Ribo-seq	GTG		11	sORFs_org_Human	sORF Upstream	Blood, HAP1, HEK293, HeLa, HFF, MDA-MB-231, RPE-1, THP-1
1716286	45	TTG ...	LNR ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	Blood
893739	48	CTA ...	LRQ ...	Ribo-seq	CTA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1401984	141	GTG ...	VCA ...	Ribo-seq	GTG		3	sORFs_org_Human	sORF Upstream	BJ, HEK293, HeLa
1401982	36	GTG ...	VFA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293, MDA-MB-231, RPE-1
893737	42	CAG ...	QTH ...	Ribo-seq	CAG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
893769	84	ATT ...	IWR ...	Ribo-seq	ATT	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
893763	48	AGG ...	RSC ...	Ribo-seq	AGG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1497730	60	CTG ...	LRG ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative sORF Upstream	BJ
893759	30	TCA ...	SVA ...	Ribo-seq	TCA	strong	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
404024	42	CAT ...	HRR ...	Ribo-seq	CAT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
522345	39	TTG ...	LHA ...	Ribo-seq	TTG		9	sORFs_org_Human	sORF Upstream	BJ, HEK293, HeLa, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
893747	36	AGC ...	SRY ...	Ribo-seq	AGC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
893757	51	CTT ...	LCH ...	Ribo-seq	CTT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
893765	78	AGG ...	RCS ...	Ribo-seq	AGG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
522343	36	CTG ...	LVL ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
893777	45	ATC ...	ITQ ...	Ribo-seq	ATC		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
273304	45	CTG ...	LAR ...	Ribo-seq	CTG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1, THP-1
893775	33	GTC ...	VLS ...	Ribo-seq	GTC		3	sORFs_org_Human	Alternative sORF Upstream	HeLa, Jurkat, THP-1
893741	36	AGT ...	SIS ...	Ribo-seq	AGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
900919	264	AGT ...	SIS ...	Ribo-seq	AGT		1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Jurkat
273302	54	CTG ...	LGD ...	Ribo-seq	CTG	moderate	12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
893761	39	CCA ...	PHR ...	Ribo-seq	CCA	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
273300	75	TTG ...	LQT ...	Ribo-seq	TTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
893725	180	AAT ...	NRK ...	Ribo-seq	AAT	moderate	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Jurkat
1818011	84	GTG ...	VTT ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa

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