Transcript 406920

Transcript

ID CARD

MetamORF ID

406920

ENST00000528074

Name

RPS13-206

Strand

Biotype

retained_intron

Start-end positions

17076955-17077678

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

HGNC:10386

Aliases

ENSG00000110700,
HGNC:10386, NCBI:6207, OFF:RPS13,
RPS13, S13

Chr 11

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
904872	51	CCT ...	PVP ...	Ribo-seq	CCT	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
904880	219	GGG ...	GSH ...	Ribo-seq	GGG		5	sORFs_org_Human	Intronic sORF	HEK293, HeLa, Jurkat, THP-1
1316184	120	ATG ...	MMF ...	Ribo-seq	ATG		3	sORFs_org_Human	Intronic sORF	HEK293, HeLa
406922	195	GGT ...	GEL ...	Ribo-seq	GGT		5	sORFs_org_Human	Intronic sORF	HCT116, HEK293, HeLa, Jurkat, THP-1
481854	69	CTG ...	LLL ...	Ribo-seq	CTG		14	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, HEK293, HEK293T, HeLa, hES, MM1S
1439479	108	CTG ...	LGC ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	HeLa
1819646	156	GTG ...	VGG ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	HeLa
481856	102	CTG ...	LAL ...	Ribo-seq	CTG		5	sORFs_org_Human	Intronic sORF	HEK293, HEK293T, HeLa
406919	51	AGG ...	RAC ...	Ribo-seq	AGG	strong	6	sORFs_org_Human	Intronic sORF	BJ, HCT116, HEK293, HeLa, Jurkat, THP-1
1439483	138	GTG ...	VWA ...	Ribo-seq	GTG		2	sORFs_org_Human	Intronic sORF	HeLa
1301574	216	TCG ...	SHA ...	Ribo-seq	TCG		2	sORFs_org_Human	Intronic sORF	BJ, Breast
904870	30	CTA ...	LST ...	Ribo-seq	CTA	moderate	5	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, Jurkat, THP-1
1316182	117	ATG ...	MFW ...	Ribo-seq	ATG		3	sORFs_org_Human	Intronic sORF	HEK293, HeLa
904878	210	GCA ...	ACS ...	Ribo-seq	GCA		6	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, Jurkat, THP-1
904876	201	CTC ...	LPG ...	Ribo-seq	CTC		1	sORFs_org_Human	Intronic sORF	Jurkat

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