Transcript 100115

Transcript

ID CARD

MetamORF ID

100115

ENST00000313433

Name

RPA2-201

Strand

Biotype

protein_coding

Start-end positions

27892073-27914513

CDS Start-stop positions

27892163-27914443

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

HGNC:10290

Aliases

ENSG00000117748,
HGNC:10290, NCBI:6118, OFF:RPA2,
RPA2

Chr 1

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
100117	45	ATG ...	MMT ...	Ribo-seq	ATG	weak	10	sORFs_org_Human	Alternative Downstream Overlapping sORF	HEK293, HEK293T, HeLa, hES, LCL, MM1S
3221082	30	ATG ...	MAS ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
1727859	57	TTG ...	LVG ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
1702167	57	GTG ...	VGI ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
898712	72	AGG ...	RVE ...	Ribo-seq	AGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1702171	75	GTG ...	VKQ ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
1702169	60	TTG ...	LVG ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
1260128	84	CTG ...	LHP ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	HAP1, HEK293T
100124	72	ATG ...	MRG ...	Ribo-seq	ATG	moderate	13	sORFs_org_Human	Alternative Downstream Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, LCL
283348	72	GTG ...	VKQ ...	Ribo-seq	GTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
100114	42	ATG ...	MTI ...	Ribo-seq	ATG	moderate	8	sORFs_org_Human	Alternative Downstream Overlapping sORF	HEK293, HEK293T, HeLa, hES, LCL
100122	51	CTG ...	LWM ...	Ribo-seq	CTG	weak	11	sORFs_org_Human	Alternative Downstream Overlapping sORF	Flp-In_T-REx-293, HEK293, HEK293T, HeLa, hES, LCL
1296040	54	GTG ...	VGI ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, MDA-MB-231

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