Transcript 3755 | MetamORF

Transcript

ID CARD

MetamORF ID

3755

ENST00000539180

Name

PRPF19-203

Strand

Biotype

retained_intron

Start-end positions

60897880-60898469

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

HGNC:17896

Aliases

ENSG00000110107,
HGNC:17896, hPSO4, NCBI:27339,
NMP200, OFF:PRPF19, PRP19,
PRPF19, PSO4, SNEV,
UBOX4

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
285826	177	ATG ...	MVT ...	Ribo-seq	ATG		4	sORFs_org_Human	Intronic sORF	HeLa, LCL
3200358	42	CAT ...	HLQ ...	Ribo-seq	CAT		1	sORFs_org_Human	Intronic sORF	HEK293
102062	219	CTG ...	LAT ...	Ribo-seq	CTG		6	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES, LCL
907596	192	TCG ...	SPS ...	Ribo-seq	TCG		1	sORFs_org_Human	Intronic sORF	Jurkat
907583	60	CAC ...	HGC ...	Ribo-seq	CAC		1	sORFs_org_Human	Intronic sORF	Jurkat
102065	234	ATG ...	MWP ...	Ribo-seq	ATG		6	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES, LCL
907589	30	TGT ...	CQA ...	Ribo-seq	TGT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
907587	90	CCA ...	PEW ...	Ribo-seq	CCA		2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
907593	168	AAT ...	NGY ...	Ribo-seq	AAT		1	sORFs_org_Human	Intronic sORF	Jurkat
407560	111	CGC ...	RKL ...	Ribo-seq	CGC		1	sORFs_org_Human	Intronic sORF	HCT116
907585	114	GTA ...	VPT ...	Ribo-seq	GTA		1	sORFs_org_Human	Intronic sORF	Jurkat
285828	183	CTG ...	LRM ...	Ribo-seq	CTG		6	sORFs_org_Human	Intronic sORF	HeLa, hES, Jurkat, LCL
285835	282	CTG ...	LWV ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	HeLa, LCL
907598	198	GGC ...	GPI ...	Ribo-seq	GGC		1	sORFs_org_Human	Intronic sORF	Jurkat
2904246	87	TTG ...	LQL ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	HeLa
102059	114	CTG ...	LRK ...	Ribo-seq	CTG		5	sORFs_org_Human	Intronic sORF	Brain, guo_2014, HEK293, HeLa
285833	276	GTG ...	VTY ...	Ribo-seq	GTG		3	sORFs_org_Human	Intronic sORF	HeLa, LCL
407562	117	GAT ...	DLR ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	HCT116
907600	213	TTC ...	FPG ...	Ribo-seq	TTC		2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
3757	222	GTG ...	VAN ...	Ribo-seq	GTG		26	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1, U2OS
907591	174	GTT ...	VTT ...	Ribo-seq	GTT		2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
3754	156	CTG ...	LAT ...	Ribo-seq	CTG		18	sORFs_org_Human	Intronic sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, LCL, MM1S
285823	153	CTG ...	LMT ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	LCL
285821	150	ATG ...	MTP ...	Ribo-seq	ATG		1	sORFs_org_Human	Intronic sORF	LCL

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