Transcript 2863 | MetamORF

Transcript

ID CARD

MetamORF ID

2863

ENST00000529592

Name

PRMT3-206

Strand

Biotype

retained_intron

Start-end positions

20405446-20509282

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

HGNC:30163

Aliases

ENSG00000185238,
HGNC:30163, HRMT1L3, NCBI:10196,
OFF:PRMT3, PRMT3

Chr 11

ORFs

40 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
283814	57	ATG ...	MLI ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	Intronic sORF	Blood, HeLa, LCL, MDA-MB-231, RPE-1
407008	168	TTT ...	FDI ...	Ribo-seq	TTT		1	sORFs_org_Human	Intronic sORF	HCT116
407000	69	AAG ...	KLG ...	Ribo-seq	AAG	weak	1	sORFs_org_Human	Intronic sORF	HCT116
1723822	30	ATG ...	MSM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Intronic sORF	Blood, HeLa, MDA-MB-231
1047003	45	TTG ...	LLF ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1
283804	78	TTG ...	LLL ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	Intronic sORF	Blood, HeLa, LCL, MDA-MB-231
1723815	30	TTG ...	LHY ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, MDA-MB-231
101395	36	TTG ...	LNN ...	Ribo-seq	TTG	moderate	15	sORFs_org_Human	Intronic sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
101384	99	CTG ...	LFE ...	Ribo-seq	CTG		6	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES, RPE-1
283794	111	ATG ...	MLG ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	Intronic sORF	HeLa, LCL, MDA-MB-231
905205	39	TGC ...	CKE ...	Ribo-seq	TGC		1	sORFs_org_Human	Intronic sORF	Jurkat
283798	36	GTG ...	VWN ...	Ribo-seq	GTG	weak	8	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
1723827	48	CTG ...	LAT ...	Ribo-seq	CTG		3	sORFs_org_Human	Intronic sORF	Blood, HeLa, MDA-MB-231
283810	48	TTG ...	LEL ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	Intronic sORF	Blood, HeLa, hES, LCL, MDA-MB-231
283802	96	CTG ...	LEF ...	Ribo-seq	CTG	strong	4	sORFs_org_Human	Intronic sORF	HeLa, LCL, MDA-MB-231
2862	84	CTG ...	LHE ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1
1723832	45	CTG ...	LET ...	Ribo-seq	CTG	strong	2	sORFs_org_Human	Intronic sORF	Blood, MDA-MB-231
3200082	36	TCC ...	STF ...	Ribo-seq	TCC	moderate	1	sORFs_org_Human	Intronic sORF	HEK293
3200080	180	ACG ...	TSI ...	Ribo-seq	ACG		1	sORFs_org_Human	Intronic sORF	HEK293
283800	102	GTG ...	VEL ...	Ribo-seq	GTG	strong	4	sORFs_org_Human	Intronic sORF	HeLa, LCL, MDA-MB-231
283812	42	TTG ...	LIN ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	Intronic sORF	Blood, HeLa, hES, LCL, MDA-MB-231
407006	159	GTC ...	VYL ...	Ribo-seq	GTC		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
1723813	33	CTG ...	LKY ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Intronic sORF	Blood, HeLa, hES, MDA-MB-231
407004	126	GAA ...	EVL ...	Ribo-seq	GAA		1	sORFs_org_Human	Intronic sORF	HCT116
1136471	42	CTG ...	LEK ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	HEK293, hES
1723829	39	TTG ...	LIY ...	Ribo-seq	TTG		3	sORFs_org_Human	Intronic sORF	Blood, HeLa, MDA-MB-231
1987168	69	CTG ...	LSF ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	HeLa
283808	66	CTG ...	LGR ...	Ribo-seq	CTG	strong	5	sORFs_org_Human	Intronic sORF	Blood, HeLa, LCL, MDA-MB-231
283816	54	CTG ...	LIE ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
1723825	51	TTG ...	LLA ...	Ribo-seq	TTG		3	sORFs_org_Human	Intronic sORF	Blood, HeLa, MDA-MB-231
101388	222	GTG ...	VNK ...	Ribo-seq	GTG		3	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES
407002	63	GTA ...	VDV ...	Ribo-seq	GTA		1	sORFs_org_Human	Intronic sORF	HCT116
2865	102	TTG ...	LKG ...	Ribo-seq	TTG	moderate	15	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
101386	231	GTG ...	VSD ...	Ribo-seq	GTG		3	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES
2903867	60	ATG ...	MQR ...	Ribo-seq	ATG		1	sORFs_org_Human	Intronic sORF	HeLa
101390	99	GTG ...	VFS ...	Ribo-seq	GTG		5	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES
283806	75	CTG ...	LLK ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Intronic sORF	HeLa, LCL, MDA-MB-231
101393	48	GTG ...	VTL ...	Ribo-seq	GTG	moderate	15	sORFs_org_Human	Intronic sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1723820	33	ATG ...	MMS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	Intronic sORF	Blood, HeLa, MDA-MB-231, RPE-1
283796	108	TTG ...	LGV ...	Ribo-seq	TTG	strong	3	sORFs_org_Human	Intronic sORF	HeLa, LCL, MDA-MB-231

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