Transcript 331 | MetamORF

Transcript

ID CARD

MetamORF ID

331

ENST00000463322

Name

PRDX3-202

Strand

Biotype

retained_intron

Start-end positions

119173745-119174772

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

HGNC:9354

Aliases

AOP-1,
AOP1, ENSG00000165672, HGNC:9354,
MER5, NCBI:10935, OFF:PRDX3,
PRDX3, SP-22

Chr 10

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
345	75	ATG ...	MHL ...	Ribo-seq	ATG	moderate	24	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
341	60	TTG ...	LCV ...	Ribo-seq	TTG	weak	22	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
347	42	ATG ...	MPC ...	Ribo-seq	ATG	weak	21	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
480943	54	ATG ...	MHP ...	Ribo-seq	ATG	moderate	10	sORFs_org_Human	Intronic sORF	HEK293, HEK293T, HeLa, hES, HFF, RPE-1
405475	45	AAG ...	KGK ...	Ribo-seq	AAG		1	sORFs_org_Human	Intronic sORF	HCT116
405477	135	CAT ...	HAP ...	Ribo-seq	CAT		5	sORFs_org_Human	Intronic sORF	HCT116, HEK293, HeLa, Jurkat, THP-1
333	54	GTG ...	VKL ...	Ribo-seq	GTG	moderate	28	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
339	42	TTG ...	LLL ...	Ribo-seq	TTG	moderate	22	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
899424	87	GTT ...	VPH ...	Ribo-seq	GTT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
1134590	33	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	HEK293
405473	48	CAG ...	QKL ...	Ribo-seq	CAG	weak	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
899422	141	TCA ...	SCH ...	Ribo-seq	TCA		1	sORFs_org_Human	Intronic sORF	Jurkat
343	69	CTG ...	LLS ...	Ribo-seq	CTG	weak	16	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
480945	66	CTG ...	LSP ...	Ribo-seq	CTG	weak	13	sORFs_org_Human	Intronic sORF	Blood, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, MDA-MB-231, RPE-1, THP-1
337	39	TTG ...	LLL ...	Ribo-seq	TTG	weak	23	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, RPE-1, THP-1
330	48	TTG ...	LSQ ...	Ribo-seq	TTG	moderate	27	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
335	30	GTG ...	VTK ...	Ribo-seq	GTG	weak	20	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
899419	33	ACC ...	TCC ...	Ribo-seq	ACC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
480950	105	GTG ...	VWV ...	Ribo-seq	GTG	weak	6	sORFs_org_Human	Intronic sORF	HEK293, HEK293T, HeLa, hES

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