Transcript 350 | MetamORF

Transcript

ID CARD

MetamORF ID

350

ENST00000298510

Name

PRDX3-201

Strand

Biotype

protein_coding

Start-end positions

119167703-119178833

CDS Start-stop positions

119168480-119178790

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

HGNC:9354

Aliases

AOP-1,
AOP1, ENSG00000165672, HGNC:9354,
MER5, NCBI:10935, OFF:PRDX3,
PRDX3, SP-22

Chr 10

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
349	42	GTG ...	VFW ...	Ribo-seq	GTG		32	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
345	75	ATG ...	MHL ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
829	246	ATG ...	MPF ...	Ribo-seq	ATG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Flp-In_T-REx-293, HEK293, HEK293T, HeLa, hES
823	114	ATG ...	MTL ...	Ribo-seq	ATG		12	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, HFF, LCL, THP-1
1817528	81	ATG ...	MCI ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
1296268	69	GTG ...	VPF ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HEK293T, HeLa
356	48	CTG ...	LPL ...	Ribo-seq	CTG	weak	24	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
1817520	96	ATG ...	MVI ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
827	120	CTG ...	LVP ...	Ribo-seq	CTG		26	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1817518	45	ATG ...	MLV ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
405466	66	TTC ...	FPR ...	Ribo-seq	TTC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
1134596	81	CTG ...	LVP ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa
821	90	ATG ...	MEK ...	Ribo-seq	ATG		28	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
405468	30	AGA ...	RFP ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
1817508	57	TTG ...	LIS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
352	72	ATG ...	MWK ...	Ribo-seq	ATG		36	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
900656	81	TCT ...	SAQ ...	Ribo-seq	TCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
825	117	TTG ...	LMT ...	Ribo-seq	TTG		11	sORFs_org_Human	InCDS Overlapping sORF	Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, LCL, THP-1
900658	96	TCA ...	SAP ...	Ribo-seq	TCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1817514	54	ATG ...	MSQ ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
354	42	CTG ...	LQP ...	Ribo-seq	CTG	weak	25	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
358	111	TTG ...	LGH ...	Ribo-seq	TTG		30	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1817510	51	CTG ...	LIN ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
3304219	771	ATG ...	MAA ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF

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