Transcript 95691 | MetamORF

Transcript

ID CARD

MetamORF ID

95691

ENST00000448165

Name

PPIF-202

Strand

Biotype

protein_coding

Start-end positions

79347658-79354086

CDS Start-stop positions

-79353762

CDS Relative positions

Sequences

Transcript sequence

CGT ...

Genome browsers

UCSC

Gene

HGNC:9259

Aliases

Cyp-D,
ENSG00000108179, hCyP3, HGNC:9259,
NCBI:10105, OFF:PPIF, PPIF

Chr 10

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
525901	69	ATG ...	MTI ...	Ribo-seq	ATG		8	sORFs_org_Human	sORF	BJ, HEK293T, HeLa, hES, loayza_puch_2016, MM1S, U2OS
100096	120	CTG ...	LWG ...	Ribo-seq	CTG		16	sORFs_org_Human	sORF	BJ, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
95697	45	CTG ...	LVL ...	Ribo-seq	CTG	strong	16	sORFs_org_Human	sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
404701	60	TCG ...	SAL ...	Ribo-seq	TCG	moderate	2	sORFs_org_Human	sORF	HCT116, HEK293
95701	117	GTG ...	VFG ...	Ribo-seq	GTG	moderate	33	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
95699	135	TTG ...	LDG ...	Ribo-seq	TTG	strong	34	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
1982585	123	TTG ...	LRY ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	sORF	HeLa, MDA-MB-231
404703	36	AAG ...	KIV ...	Ribo-seq	AAG	moderate	3	sORFs_org_Human	sORF	HCT116, HEK293, Jurkat
1438883	291	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	HeLa
95690	60	ATG ...	MAQ ...	Ribo-seq	ATG	strong	28	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
95705	48	GTG ...	VGG ...	Ribo-seq	GTG	strong	24	sORFs_org_Human	sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
95703	84	GTG ...	VKK ...	Ribo-seq	GTG	moderate	31	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1438887	282	GTG ...	VWF ...	Ribo-seq	GTG		1	sORFs_org_Human	sORF	HeLa
896700	63	ACA ...	TMA ...	Ribo-seq	ACA	moderate	1	sORFs_org_Human	sORF	Jurkat
95695	48	ATG ...	MLV ...	Ribo-seq	ATG	weak	18	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
1438885	285	CTG ...	LVW ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	HeLa
896694	39	CCA ...	PTG ...	Ribo-seq	CCA		2	sORFs_org_Human	sORF	HEK293, Jurkat
95693	66	GTG ...	VSC ...	Ribo-seq	GTG	weak	15	sORFs_org_Human	sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
896708	54	AGT ...	SGR ...	Ribo-seq	AGT	strong	1	sORFs_org_Human	sORF	Jurkat
896702	33	CGG ...	REV ...	Ribo-seq	CGG	strong	1	sORFs_org_Human	sORF	Jurkat
97695	48	CTG ...	LVR ...	Ribo-seq	CTG	strong	15	sORFs_org_Human	sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
896704	33	GAA ...	ELY ...	Ribo-seq	GAA		2	sORFs_org_Human	sORF	HEK293, Jurkat
896706	81	GTT ...	VGW ...	Ribo-seq	GTT	moderate	1	sORFs_org_Human	sORF	Jurkat
1982583	129	ATG ...	MTL ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	sORF	HeLa, MDA-MB-231
100098	108	GTG ...	VGA ...	Ribo-seq	GTG		17	sORFs_org_Human	sORF	BJ, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
404699	45	AGA ...	RGH ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	sORF	HCT116
480619	45	GTG ...	VRR ...	Ribo-seq	GTG	weak	15	sORFs_org_Human	sORF	Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
896698	63	GGG ...	GRL ...	Ribo-seq	GGG	moderate	1	sORFs_org_Human	sORF	Jurkat

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