Transcript 9674 | MetamORF

Transcript

ID CARD

MetamORF ID

9674

ENST00000480169

Name

PPIE-211

Strand

Biotype

processed_transcript

Start-end positions

39738990-39745498

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGT ...

Genome browsers

UCSC

Gene

HGNC:9258

Aliases

CyP-33,
ENSG00000084072, HGNC:9258, MGC111222,
MGC3736, NCBI:10450, OFF:PPIE,
PPIE

Chr 1

ORFs

40 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
106977	72	ATG ...	MLR ...	Ribo-seq	ATG		18	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
1140744	159	CTG ...	LQE ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
298842	123	TTG ...	LAY ...	Ribo-seq	TTG		13	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HEK293T, HeLa, LCL, MM1S, RPE-1, THP-1
918474	90	TGG ...	WTT ...	Ribo-seq	TGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
918495	60	TCA ...	SCC ...	Ribo-seq	TCA	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
107009	54	ATG ...	MNL ...	Ribo-seq	ATG	moderate	12	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
9673	51	TTG ...	LAK ...	Ribo-seq	TTG		24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
298912	60	TTG ...	LKR ...	Ribo-seq	TTG		7	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, LCL, MDA-MB-231, THP-1
918613	36	AAT ...	NSC ...	Ribo-seq	AAT	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
918579	48	TTT ...	FWT ...	Ribo-seq	TTT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
107019	147	TTG ...	LKK ...	Ribo-seq	TTG		6	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, HFF
641287	60	TTG ...	LGT ...	Ribo-seq	TTG	strong	9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, THP-1
641284	108	TTG ...	LLK ...	Ribo-seq	TTG	weak	3	sORFs_org_Human	ncRNA sORF	Blood, HEK293, THP-1
918513	51	GTT ...	VHS ...	Ribo-seq	GTT	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
918646	156	GAT ...	DDW ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
918633	42	CCA ...	PMR ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
918598	39	TAC ...	YNS ...	Ribo-seq	TAC	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
918524	141	CCT ...	PFG ...	Ribo-seq	CCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
1140768	45	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	ncRNA sORF	HEK293
1140770	42	CTG ...	LQQ ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES
1320550	63	TTG ...	LSF ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HEK293
298910	72	CTG ...	LGR ...	Ribo-seq	CTG		9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, hES, LCL, MDA-MB-231, RPE-1, THP-1
918499	153	GCT ...	AAF ...	Ribo-seq	GCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
1140752	186	CTG ...	LAE ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
272333	75	TTG ...	LLL ...	Ribo-seq	TTG		9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, LCL
106983	54	TTG ...	LET ...	Ribo-seq	TTG		20	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
106975	135	ATG ...	MEI ...	Ribo-seq	ATG		11	sORFs_org_Human	ncRNA sORF	HEK293, HEK293T, HeLa, hES, MM1S, RPE-1, THP-1
298865	33	TTG ...	LLL ...	Ribo-seq	TTG		13	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
183980	120	GTG ...	VNS ...	Ribo-seq	GTG		16	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MM1S, RPE-1, THP-1, U2OS
9706	33	CTG ...	LVE ...	Ribo-seq	CTG	moderate	17	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
918487	168	GAC ...	DKV ...	Ribo-seq	GAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
298844	114	TTG ...	LQV ...	Ribo-seq	TTG		17	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
1298976	162	CTG ...	LGC ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293, HEK293T, HeLa
626923	150	TTG ...	LGL ...	Ribo-seq	TTG		7	sORFs_org_Human	ncRNA sORF	HEK293, HEK293T, HeLa, MM1S, THP-1
641289	45	CTG ...	LAA ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, MDA-MB-231, MM1S, THP-1
107013	39	TTG ...	LDV ...	Ribo-seq	TTG	moderate	11	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, THP-1
106979	69	CTG ...	LRS ...	Ribo-seq	CTG		18	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
298846	108	GTG ...	VDW ...	Ribo-seq	GTG		18	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
107011	48	CTG ...	LSF ...	Ribo-seq	CTG	moderate	12	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
1140755	174	GTG ...	VDD ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	HEK293, HeLa

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