Transcript 4514 | MetamORF

Transcript

ID CARD

MetamORF ID

4514

ENST00000531996

Name

POLR2G-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

62761795-62765724

CDS Start-stop positions

-62762614

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

HGNC:9194

Aliases

ENSG00000168002,
HGNC:9194, hRPB19, hsRPB7,
NCBI:5436, OFF:POLR2G, POLR2G,
RPB7

Chr 11

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
4520	51	GTG ...	VKQ ...	Ribo-seq	GTG		29	sORFs_org_Human	NMD sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1989083	42	CTG ...	LHF ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	NMD sORF	HeLa, hES, MDA-MB-231
4516	90	CTG ...	LHP ...	Ribo-seq	CTG		32	sORFs_org_Human	NMD sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1989081	96	CTG ...	LSL ...	Ribo-seq	CTG		2	sORFs_org_Human	NMD sORF	HeLa, hES
908530	69	CCC ...	PNL ...	Ribo-seq	CCC		1	sORFs_org_Human	NMD sORF	Jurkat
4518	63	TTG ...	LLN ...	Ribo-seq	TTG		31	sORFs_org_Human	NMD sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4513	93	CTG ...	LLH ...	Ribo-seq	CTG		32	sORFs_org_Human	NMD sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
908532	36	TTT ...	FKK ...	Ribo-seq	TTT	weak	1	sORFs_org_Human	NMD sORF	Jurkat
908526	96	ATC ...	ILL ...	Ribo-seq	ATC		1	sORFs_org_Human	NMD sORF	Jurkat
407800	87	CAC ...	HPR ...	Ribo-seq	CAC		1	sORFs_org_Human	NMD sORF	HCT116
2316041	42	CTG ...	LSG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	NMD sORF	MDA-MB-231

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