Transcript 8507 | MetamORF

Transcript

ID CARD

MetamORF ID

8507

ENST00000301788

Name

POLR2G-201

Strand

Biotype

protein_coding

Start-end positions

62761544-62766710

CDS Start-stop positions

62761649-62766507

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

HGNC:9194

Aliases

ENSG00000168002,
HGNC:9194, hRPB19, hsRPB7,
NCBI:5436, OFF:POLR2G, POLR2G,
RPB7

Chr 11

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
916434	42	CCA ...	PTH ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
8509	186	TTG ...	LFS ...	Ribo-seq	TTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
8513	126	TTG ...	LDS ...	Ribo-seq	TTG		18	sORFs_org_Human	InCDS Overlapping sORF	Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
916432	114	CAG ...	QKL ...	Ribo-seq	CAG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
8511	153	ATG ...	MLL ...	Ribo-seq	ATG		21	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain, Brain_tumor, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
638392	108	CTG ...	LGL ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative Overlapping sORF Upstream	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1
8515	108	TTG ...	LGP ...	Ribo-seq	TTG		17	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
916430	51	GAC ...	DSA ...	Ribo-seq	GAC		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
8519	210	CTG ...	LAE ...	Ribo-seq	CTG		28	sORFs_org_Human	Alternative CDS sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
8506	216	TTG ...	LSF ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
483793	54	GTG ...	VDS ...	Ribo-seq	GTG		18	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
3307681	519	ATG ...	MFY ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
635225	102	CTG ...	LGL ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative Overlapping sORF Upstream	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1
8525	114	CTG ...	LQG ...	Ribo-seq	CTG		19	sORFs_org_Human	Alternative CDS sORF	guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016
8517	54	TTG ...	LIL ...	Ribo-seq	TTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1
8521	153	CTG ...	LPG ...	Ribo-seq	CTG		28	sORFs_org_Human	Alternative CDS sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
8523	120	CTG ...	LGL ...	Ribo-seq	CTG		17	sORFs_org_Human	Alternative CDS sORF	guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL

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