Transcript 5106 | MetamORF

Transcript

ID CARD

MetamORF ID

5106

ENST00000532469

Name

POLA2-206

Strand

Biotype

retained_intron

Start-end positions

65261932-65280020

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

HGNC:30073

Aliases

ENSG00000014138,
FLJ21662, HGNC:30073, NCBI:23649,
OFF:POLA2, POLA2

Chr 11

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5110	90	TTG ...	LGC ...	Ribo-seq	TTG		13	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, HFF, RPE-1, THP-1
1048056	33	GTG ...	VTD ...	Ribo-seq	GTG	weak	5	sORFs_org_Human	Intronic sORF	HEK293, HeLa, RPE-1
5108	99	CTG ...	LKV ...	Ribo-seq	CTG		13	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, HFF, RPE-1, THP-1
102773	45	TTG ...	LGA ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Intronic sORF	HEK293
287388	54	TTG ...	LAA ...	Ribo-seq	TTG	strong	4	sORFs_org_Human	Intronic sORF	Blood, HeLa, LCL, MDA-MB-231
909488	39	CCC ...	PSS ...	Ribo-seq	CCC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
635649	51	TTG ...	LLG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Intronic sORF	THP-1
287386	33	CTG ...	LGE ...	Ribo-seq	CTG	strong	4	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, LCL
2545224	201	CTG ...	LSR ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Intronic sORF	HEK293, hES, RPE-1
635653	108	TTG ...	LGA ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Intronic sORF	Blood, hES, MDA-MB-231, RPE-1, THP-1
102771	135	CTG ...	LRS ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Intronic sORF	HEK293
909484	90	TGG ...	WVG ...	Ribo-seq	TGG	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
529728	69	ATG ...	MSR ...	Ribo-seq	ATG		8	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, THP-1, U2OS
5105	168	GTG ...	VVT ...	Ribo-seq	GTG		17	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
102769	147	CTG ...	LPP ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	Intronic sORF	HEK293, HEK293T, Jurkat
287378	84	TTG ...	LGD ...	Ribo-seq	TTG	strong	6	sORFs_org_Human	Intronic sORF	Blood, HEK293, hES, LCL, loayza_puch_2016, MDA-MB-231
408103	108	ATC ...	IFG ...	Ribo-seq	ATC		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
635651	117	GTG ...	VGF ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Intronic sORF	Blood, hES, MDA-MB-231, RPE-1, THP-1
1317584	48	CTG ...	LLP ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Intronic sORF	HEK293, RPE-1
102776	87	GTG ...	VGR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	Intronic sORF	Blood, HEK293, MDA-MB-231, THP-1
909499	111	GGA ...	GNI ...	Ribo-seq	GGA		1	sORFs_org_Human	Intronic sORF	Jurkat
909501	93	GTC ...	VLG ...	Ribo-seq	GTC		1	sORFs_org_Human	Intronic sORF	Jurkat
909490	114	CTG ...	LQI ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	Jurkat
102767	174	TTG ...	LAG ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Intronic sORF	HEK293
529726	117	TTG ...	LVW ...	Ribo-seq	TTG		7	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, U2OS
5112	120	CTG ...	LTC ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, HFF, RPE-1, THP-1
2545222	207	CTG ...	LRS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Intronic sORF	HEK293, RPE-1
2684854	195	TTG ...	LGQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Intronic sORF	RPE-1
909486	144	TCC ...	SAS ...	Ribo-seq	TCC		1	sORFs_org_Human	Intronic sORF	Jurkat

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